Atlas of Genetics and Cytogenetics in Oncology and Haematology


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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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KRT81 (keratin 81, type II)

Identity

Other namesHB1
Hb-1
KRTHB1
MLN137
ghHkb1
hHAKB2-1
HGNC (Hugo) KRT81
LocusID (NCBI) 3887
Location 12q13.13
Location_base_pair Starts at 52679697 and ends at 52685299 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KRT81   6458
Cards
Entrez_Gene (NCBI)KRT81  3887  keratin 81, type II
GeneCards (Weizmann)KRT81
Ensembl hg19 (Hinxton)ENSG00000205426 [Gene_View]  chr12:52679697-52685299 [Contig_View]  KRT81 [Vega]
Ensembl hg38 (Hinxton)ENSG00000205426 [Gene_View]  chr12:52679697-52685299 [Contig_View]  KRT81 [Vega]
ICGC DataPortalENSG00000205426
cBioPortalKRT81
AceView (NCBI)KRT81
Genatlas (Paris)KRT81
WikiGenes3887
SOURCE (Princeton)KRT81
Genomic and cartography
GoldenPath hg19 (UCSC)KRT81  -     chr12:52679697-52685299 -  12q13.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRT81  -     12q13.13   [Description]    (hg38-Dec_2013)
EnsemblKRT81 - 12q13.13 [CytoView hg19]  KRT81 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIKRT81 [Mapview hg19]  KRT81 [Mapview hg38]
OMIM158000   602153   
Gene and transcription
Genbank (Entrez)BC006452 BC021241 BC031978 BC117465 BC117467
RefSeq transcript (Entrez)NM_002281
RefSeq genomic (Entrez)NC_000012 NC_018923 NG_008184 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)KRT81
Cluster EST : UnigeneHs.658118 [ NCBI ]
CGAP (NCI)Hs.658118
Alternative Splicing : Fast-db (Paris)GSHG0007477
Alternative Splicing GalleryENSG00000205426
Gene ExpressionKRT81 [ NCBI-GEO ]     KRT81 [ SEEK ]   KRT81 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14533 (Uniprot)
NextProtQ14533  [Medical]
With graphics : InterProQ14533
Splice isoforms : SwissVarQ14533 (Swissvar)
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_II   
Related proteins : CluSTrQ14533
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
DMDM Disease mutations3887
Blocks (Seattle)Q14533
Human Protein AtlasENSG00000205426
Peptide AtlasQ14533
HPRD03691
IPIIPI00760863   IPI00871418   IPI01019025   IPI01019117   IPI01019024   
Protein Interaction databases
DIP (DOE-UCLA)Q14533
IntAct (EBI)Q14533
FunCoupENSG00000205426
BioGRIDKRT81
IntegromeDBKRT81
STRING (EMBL)KRT81
Ontologies - Pathways
QuickGOQ14533
Ontology : AmiGOstructural molecule activity  protein binding  extracellular space  keratin filament  
Ontology : EGO-EBIstructural molecule activity  protein binding  extracellular space  keratin filament  
Protein Interaction DatabaseKRT81
DoCM (Curated mutations)KRT81
Wikipedia pathwaysKRT81
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerKRT81 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT81
dbVarKRT81
ClinVarKRT81
1000_GenomesKRT81 
Exome Variant ServerKRT81
SNP (GeneSNP Utah)KRT81
SNP : HGBaseKRT81
Genetic variants : HAPMAPKRT81
Genomic Variants (DGV)KRT81 [DGVbeta]
Mutations
ICGC Data PortalENSG00000205426 
Somatic Mutations in Cancer : COSMICKRT81 
CONAN: Copy Number AnalysisKRT81 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)12:52679697-52685299
Mutations and Diseases : HGMDKRT81
OMIM158000    602153   
MedgenKRT81
NextProtQ14533 [Medical]
GENETestsKRT81
Disease Genetic AssociationKRT81
Huge Navigator KRT81 [HugePedia]  KRT81 [HugeCancerGEM]
snp3D : Map Gene to Disease3887
DGIdb (Drug Gene Interaction db)KRT81
General knowledge
Homologs : HomoloGeneKRT81
Homology/Alignments : Family Browser (UCSC)KRT81
Phylogenetic Trees/Animal Genes : TreeFamKRT81
Chemical/Protein Interactions : CTD3887
Chemical/Pharm GKB GenePA30247
Clinical trialKRT81
Cancer Resource (Charite)ENSG00000205426
Other databases
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
CoreMineKRT81
GoPubMedKRT81
iHOPKRT81
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 15:48:10 CET 2015

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For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.