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KRT82 (keratin 82, type II)

Identity

Alias_namesKRTHB2
keratin, hair, basic, 2
keratin 82, type II
Alias_symbol (synonym)Hb-2
Other aliasHB2
HGNC (Hugo) KRT82
LocusID (NCBI) 3888
Atlas_Id 65044
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 52787735 and ends at 52800176 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT82   6459
Cards
Entrez_Gene (NCBI)KRT82  3888  keratin 82, type II
AliasesHB2; Hb-2; KRTHB2
GeneCards (Weizmann)KRT82
Ensembl hg19 (Hinxton)ENSG00000161850 [Gene_View]  chr12:52787735-52800176 [Contig_View]  KRT82 [Vega]
Ensembl hg38 (Hinxton)ENSG00000161850 [Gene_View]  chr12:52787735-52800176 [Contig_View]  KRT82 [Vega]
ICGC DataPortalENSG00000161850
TCGA cBioPortalKRT82
AceView (NCBI)KRT82
Genatlas (Paris)KRT82
WikiGenes3888
SOURCE (Princeton)KRT82
Genetics Home Reference (NIH)KRT82
Genomic and cartography
GoldenPath hg19 (UCSC)KRT82  -     chr12:52787735-52800176 -  12q13.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRT82  -     12q13.13   [Description]    (hg38-Dec_2013)
EnsemblKRT82 - 12q13.13 [CytoView hg19]  KRT82 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIKRT82 [Mapview hg19]  KRT82 [Mapview hg38]
OMIM601078   
Gene and transcription
Genbank (Entrez)AJ628419 BC148497 BC153099
RefSeq transcript (Entrez)NM_033033
RefSeq genomic (Entrez)NC_000012 NC_018923 NG_012298 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)KRT82
Cluster EST : UnigeneHs.134640 [ NCBI ]
CGAP (NCI)Hs.134640
Alternative Splicing GalleryENSG00000161850
Gene ExpressionKRT82 [ NCBI-GEO ]   KRT82 [ EBI - ARRAY_EXPRESS ]   KRT82 [ SEEK ]   KRT82 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT82 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3888
GTEX Portal (Tissue expression)KRT82
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NSB4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NSB4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NSB4
Splice isoforms : SwissVarQ9NSB4
PhosPhoSitePlusQ9NSB4
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_II   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Conserved Domain (NCBI)KRT82
DMDM Disease mutations3888
Blocks (Seattle)KRT82
SuperfamilyQ9NSB4
Human Protein AtlasENSG00000161850
Peptide AtlasQ9NSB4
HPRD03048
IPIIPI00300053   
Protein Interaction databases
DIP (DOE-UCLA)Q9NSB4
IntAct (EBI)Q9NSB4
FunCoupENSG00000161850
BioGRIDKRT82
STRING (EMBL)KRT82
ZODIACKRT82
Ontologies - Pathways
QuickGOQ9NSB4
Ontology : AmiGObiological_process  structural constituent of epidermis  keratin filament  
Ontology : EGO-EBIbiological_process  structural constituent of epidermis  keratin filament  
NDEx NetworkKRT82
Atlas of Cancer Signalling NetworkKRT82
Wikipedia pathwaysKRT82
Orthology - Evolution
OrthoDB3888
GeneTree (enSembl)ENSG00000161850
Phylogenetic Trees/Animal Genes : TreeFamKRT82
HOVERGENQ9NSB4
HOGENOMQ9NSB4
Homologs : HomoloGeneKRT82
Homology/Alignments : Family Browser (UCSC)KRT82
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT82 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT82
dbVarKRT82
ClinVarKRT82
1000_GenomesKRT82 
Exome Variant ServerKRT82
ExAC (Exome Aggregation Consortium)KRT82 (select the gene name)
Genetic variants : HAPMAP3888
Genomic Variants (DGV)KRT82 [DGVbeta]
DECIPHER (Syndromes)12:52787735-52800176  ENSG00000161850
CONAN: Copy Number AnalysisKRT82 
Mutations
ICGC Data PortalKRT82 
TCGA Data PortalKRT82 
Broad Tumor PortalKRT82
OASIS PortalKRT82 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT82  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT82
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT82
DgiDB (Drug Gene Interaction Database)KRT82
DoCM (Curated mutations)KRT82 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT82 (select a term)
intoGenKRT82
Cancer3DKRT82(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601078   
Orphanet
MedgenKRT82
Genetic Testing Registry KRT82
NextProtQ9NSB4 [Medical]
TSGene3888
GENETestsKRT82
Huge Navigator KRT82 [HugePedia]
snp3D : Map Gene to Disease3888
BioCentury BCIQKRT82
ClinGenKRT82
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3888
Chemical/Pharm GKB GenePA30248
Clinical trialKRT82
Miscellaneous
canSAR (ICR)KRT82 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT82
EVEXKRT82
GoPubMedKRT82
iHOPKRT82
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:10:17 CET 2017

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