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KRT83 (keratin 83)

Identity

Alias_namesKRTHB3
keratin, hair, basic, 3
keratin 83, type II
Alias_symbol (synonym)Hb-3
Other aliasHB3
HGNC (Hugo) KRT83
LocusID (NCBI) 3889
Atlas_Id 65045
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 52314301 and ends at 52321398 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT83   6460
Cards
Entrez_Gene (NCBI)KRT83  3889  keratin 83
AliasesHB3; Hb-3; KRTHB3
GeneCards (Weizmann)KRT83
Ensembl hg19 (Hinxton)ENSG00000170523 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170523 [Gene_View]  chr12:52314301-52321398 [Contig_View]  KRT83 [Vega]
ICGC DataPortalENSG00000170523
TCGA cBioPortalKRT83
AceView (NCBI)KRT83
Genatlas (Paris)KRT83
WikiGenes3889
SOURCE (Princeton)KRT83
Genetics Home Reference (NIH)KRT83
Genomic and cartography
GoldenPath hg38 (UCSC)KRT83  -     chr12:52314301-52321398 -  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRT83  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblKRT83 - 12q13.13 [CytoView hg19]  KRT83 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIKRT83 [Mapview hg19]  KRT83 [Mapview hg38]
OMIM158000   602765   
Gene and transcription
Genbank (Entrez)AK314904 BC069546 BC126935 BC128063 X99141
RefSeq transcript (Entrez)NM_002282
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRT83
Cluster EST : UnigeneHs.720768 [ NCBI ]
CGAP (NCI)Hs.720768
Alternative Splicing GalleryENSG00000170523
Gene ExpressionKRT83 [ NCBI-GEO ]   KRT83 [ EBI - ARRAY_EXPRESS ]   KRT83 [ SEEK ]   KRT83 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT83 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3889
GTEX Portal (Tissue expression)KRT83
Protein : pattern, domain, 3D structure
UniProt/SwissProtP78385   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP78385  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP78385
Splice isoforms : SwissVarP78385
PhosPhoSitePlusP78385
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)Growth_fac_rcpt_    IF    Intermediate_filament_CS    Keratin_2_head    Keratin_II   
Domain families : Pfam (Sanger)Filament (PF00038)    Keratin_2_head (PF16208)   
Domain families : Pfam (NCBI)pfam00038    pfam16208   
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)KRT83
DMDM Disease mutations3889
Blocks (Seattle)KRT83
SuperfamilyP78385
Human Protein AtlasENSG00000170523
Peptide AtlasP78385
HPRD09097
IPIIPI00297795   
Protein Interaction databases
DIP (DOE-UCLA)P78385
IntAct (EBI)P78385
FunCoupENSG00000170523
BioGRIDKRT83
STRING (EMBL)KRT83
ZODIACKRT83
Ontologies - Pathways
QuickGOP78385
Ontology : AmiGOstructural molecule activity  protein binding  extracellular space  cytosol  aging  epidermis development  keratinization  hair cycle  keratin filament  cornification  
Ontology : EGO-EBIstructural molecule activity  protein binding  extracellular space  cytosol  aging  epidermis development  keratinization  hair cycle  keratin filament  cornification  
NDEx NetworkKRT83
Atlas of Cancer Signalling NetworkKRT83
Wikipedia pathwaysKRT83
Orthology - Evolution
OrthoDB3889
GeneTree (enSembl)ENSG00000170523
Phylogenetic Trees/Animal Genes : TreeFamKRT83
HOVERGENP78385
HOGENOMP78385
Homologs : HomoloGeneKRT83
Homology/Alignments : Family Browser (UCSC)KRT83
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT83 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT83
dbVarKRT83
ClinVarKRT83
1000_GenomesKRT83 
Exome Variant ServerKRT83
ExAC (Exome Aggregation Consortium)KRT83 (select the gene name)
Genetic variants : HAPMAP3889
Genomic Variants (DGV)KRT83 [DGVbeta]
DECIPHERKRT83 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRT83 
Mutations
ICGC Data PortalKRT83 
TCGA Data PortalKRT83 
Broad Tumor PortalKRT83
OASIS PortalKRT83 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT83  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT83
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT83
DgiDB (Drug Gene Interaction Database)KRT83
DoCM (Curated mutations)KRT83 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT83 (select a term)
intoGenKRT83
Cancer3DKRT83(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM158000    602765   
Orphanet8581   
MedgenKRT83
Genetic Testing Registry KRT83
NextProtP78385 [Medical]
TSGene3889
GENETestsKRT83
Target ValidationKRT83
Huge Navigator KRT83 [HugePedia]
snp3D : Map Gene to Disease3889
BioCentury BCIQKRT83
ClinGenKRT83
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3889
Chemical/Pharm GKB GenePA30249
Clinical trialKRT83
Miscellaneous
canSAR (ICR)KRT83 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT83
EVEXKRT83
GoPubMedKRT83
iHOPKRT83
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:12 CEST 2017

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