Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRT84 (keratin 84)

Identity

Alias_namesKRTHB4
keratin, hair, basic, 4
keratin 84, type II
Alias_symbol (synonym)Hb-4
Other aliasHB4
HGNC (Hugo) KRT84
LocusID (NCBI) 3890
Atlas_Id 65046
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 52377812 and ends at 52385633 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT84   6461
Cards
Entrez_Gene (NCBI)KRT84  3890  keratin 84
AliasesHB4; KRTHB4
GeneCards (Weizmann)KRT84
Ensembl hg19 (Hinxton)ENSG00000161849 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161849 [Gene_View]  chr12:52377812-52385633 [Contig_View]  KRT84 [Vega]
ICGC DataPortalENSG00000161849
TCGA cBioPortalKRT84
AceView (NCBI)KRT84
Genatlas (Paris)KRT84
WikiGenes3890
SOURCE (Princeton)KRT84
Genetics Home Reference (NIH)KRT84
Genomic and cartography
GoldenPath hg38 (UCSC)KRT84  -     chr12:52377812-52385633 -  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRT84  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblKRT84 - 12q13.13 [CytoView hg19]  KRT84 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIKRT84 [Mapview hg19]  KRT84 [Mapview hg38]
OMIM602766   
Gene and transcription
Genbank (Entrez)AJ628420 AK314030 BC069647
RefSeq transcript (Entrez)NM_033045
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRT84
Cluster EST : UnigeneHs.272336 [ NCBI ]
CGAP (NCI)Hs.272336
Alternative Splicing GalleryENSG00000161849
Gene ExpressionKRT84 [ NCBI-GEO ]   KRT84 [ EBI - ARRAY_EXPRESS ]   KRT84 [ SEEK ]   KRT84 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT84 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3890
GTEX Portal (Tissue expression)KRT84
Human Protein AtlasENSG00000161849-KRT84 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NSB2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NSB2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NSB2
Splice isoforms : SwissVarQ9NSB2
PhosPhoSitePlusQ9NSB2
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_2_head    Keratin_II   
Domain families : Pfam (Sanger)Filament (PF00038)    Keratin_2_head (PF16208)   
Domain families : Pfam (NCBI)pfam00038    pfam16208   
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)KRT84
DMDM Disease mutations3890
Blocks (Seattle)KRT84
SuperfamilyQ9NSB2
Human Protein Atlas [tissue]ENSG00000161849-KRT84 [tissue]
Peptide AtlasQ9NSB2
HPRD09098
IPIIPI00300052   
Protein Interaction databases
DIP (DOE-UCLA)Q9NSB2
IntAct (EBI)Q9NSB2
FunCoupENSG00000161849
BioGRIDKRT84
STRING (EMBL)KRT84
ZODIACKRT84
Ontologies - Pathways
QuickGOQ9NSB2
Ontology : AmiGOhair follicle development  structural constituent of cytoskeleton  cytosol  cytoskeleton organization  structural constituent of epidermis  keratinization  nail development  keratin filament  regulation of keratinocyte differentiation  extracellular exosome  cornification  
Ontology : EGO-EBIhair follicle development  structural constituent of cytoskeleton  cytosol  cytoskeleton organization  structural constituent of epidermis  keratinization  nail development  keratin filament  regulation of keratinocyte differentiation  extracellular exosome  cornification  
NDEx NetworkKRT84
Atlas of Cancer Signalling NetworkKRT84
Wikipedia pathwaysKRT84
Orthology - Evolution
OrthoDB3890
GeneTree (enSembl)ENSG00000161849
Phylogenetic Trees/Animal Genes : TreeFamKRT84
HOVERGENQ9NSB2
HOGENOMQ9NSB2
Homologs : HomoloGeneKRT84
Homology/Alignments : Family Browser (UCSC)KRT84
Gene fusions - Rearrangements
Tumor Fusion PortalKRT84
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT84 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT84
dbVarKRT84
ClinVarKRT84
1000_GenomesKRT84 
Exome Variant ServerKRT84
ExAC (Exome Aggregation Consortium)ENSG00000161849
GNOMAD BrowserENSG00000161849
Genetic variants : HAPMAP3890
Genomic Variants (DGV)KRT84 [DGVbeta]
DECIPHERKRT84 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRT84 
Mutations
ICGC Data PortalKRT84 
TCGA Data PortalKRT84 
Broad Tumor PortalKRT84
OASIS PortalKRT84 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT84  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT84
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT84
DgiDB (Drug Gene Interaction Database)KRT84
DoCM (Curated mutations)KRT84 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT84 (select a term)
intoGenKRT84
Cancer3DKRT84(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602766   
Orphanet
DisGeNETKRT84
MedgenKRT84
Genetic Testing Registry KRT84
NextProtQ9NSB2 [Medical]
TSGene3890
GENETestsKRT84
Target ValidationKRT84
Huge Navigator KRT84 [HugePedia]
snp3D : Map Gene to Disease3890
BioCentury BCIQKRT84
ClinGenKRT84
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3890
Chemical/Pharm GKB GenePA30250
Clinical trialKRT84
Miscellaneous
canSAR (ICR)KRT84 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT84
EVEXKRT84
GoPubMedKRT84
iHOPKRT84
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:26:23 CET 2017

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