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KRT85 (keratin 85)

Identity

Alias_namesKRTHB5
keratin, hair, basic, 5
keratin 85, type II
Alias_symbol (synonym)Hb-5
Other aliasECTD4
HB5
K85
hHb5
HGNC (Hugo) KRT85
LocusID (NCBI) 3891
Atlas_Id 65047
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 52360006 and ends at 52364622 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT85   6462
Cards
Entrez_Gene (NCBI)KRT85  3891  keratin 85
AliasesECTD4; HB5; Hb-5; K85; 
KRTHB5; hHb5
GeneCards (Weizmann)KRT85
Ensembl hg19 (Hinxton)ENSG00000135443 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135443 [Gene_View]  chr12:52360006-52364622 [Contig_View]  KRT85 [Vega]
ICGC DataPortalENSG00000135443
TCGA cBioPortalKRT85
AceView (NCBI)KRT85
Genatlas (Paris)KRT85
WikiGenes3891
SOURCE (Princeton)KRT85
Genetics Home Reference (NIH)KRT85
Genomic and cartography
GoldenPath hg38 (UCSC)KRT85  -     chr12:52360006-52364622 -  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRT85  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblKRT85 - 12q13.13 [CytoView hg19]  KRT85 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIKRT85 [Mapview hg19]  KRT85 [Mapview hg38]
OMIM602032   602767   
Gene and transcription
Genbank (Entrez)AK302303 BC166627 X99140
RefSeq transcript (Entrez)NM_001300810 NM_002283
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRT85
Cluster EST : UnigeneHs.182507 [ NCBI ]
CGAP (NCI)Hs.182507
Alternative Splicing GalleryENSG00000135443
Gene ExpressionKRT85 [ NCBI-GEO ]   KRT85 [ EBI - ARRAY_EXPRESS ]   KRT85 [ SEEK ]   KRT85 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT85 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3891
GTEX Portal (Tissue expression)KRT85
Protein : pattern, domain, 3D structure
UniProt/SwissProtP78386   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP78386  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP78386
Splice isoforms : SwissVarP78386
PhosPhoSitePlusP78386
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_2_head    Keratin_II   
Domain families : Pfam (Sanger)Filament (PF00038)    Keratin_2_head (PF16208)   
Domain families : Pfam (NCBI)pfam00038    pfam16208   
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)KRT85
DMDM Disease mutations3891
Blocks (Seattle)KRT85
SuperfamilyP78386
Human Protein AtlasENSG00000135443
Peptide AtlasP78386
HPRD04139
IPIIPI00032541   IPI00922826   
Protein Interaction databases
DIP (DOE-UCLA)P78386
IntAct (EBI)P78386
FunCoupENSG00000135443
BioGRIDKRT85
STRING (EMBL)KRT85
ZODIACKRT85
Ontologies - Pathways
QuickGOP78386
Ontology : AmiGOstructural molecule activity  extracellular space  cytosol  epidermis development  keratinization  keratin filament  cornification  
Ontology : EGO-EBIstructural molecule activity  extracellular space  cytosol  epidermis development  keratinization  keratin filament  cornification  
NDEx NetworkKRT85
Atlas of Cancer Signalling NetworkKRT85
Wikipedia pathwaysKRT85
Orthology - Evolution
OrthoDB3891
GeneTree (enSembl)ENSG00000135443
Phylogenetic Trees/Animal Genes : TreeFamKRT85
HOVERGENP78386
HOGENOMP78386
Homologs : HomoloGeneKRT85
Homology/Alignments : Family Browser (UCSC)KRT85
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT85 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT85
dbVarKRT85
ClinVarKRT85
1000_GenomesKRT85 
Exome Variant ServerKRT85
ExAC (Exome Aggregation Consortium)KRT85 (select the gene name)
Genetic variants : HAPMAP3891
Genomic Variants (DGV)KRT85 [DGVbeta]
DECIPHERKRT85 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRT85 
Mutations
ICGC Data PortalKRT85 
TCGA Data PortalKRT85 
Broad Tumor PortalKRT85
OASIS PortalKRT85 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT85  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT85
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRT85
DgiDB (Drug Gene Interaction Database)KRT85
DoCM (Curated mutations)KRT85 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT85 (select a term)
intoGenKRT85
Cancer3DKRT85(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602032    602767   
Orphanet10918   
MedgenKRT85
Genetic Testing Registry KRT85
NextProtP78386 [Medical]
TSGene3891
GENETestsKRT85
Target ValidationKRT85
Huge Navigator KRT85 [HugePedia]
snp3D : Map Gene to Disease3891
BioCentury BCIQKRT85
ClinGenKRT85
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3891
Chemical/Pharm GKB GenePA30251
Clinical trialKRT85
Miscellaneous
canSAR (ICR)KRT85 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT85
EVEXKRT85
GoPubMedKRT85
iHOPKRT85
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:04 CEST 2017

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