Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRT86 (keratin 86, type II)

Identity

Other namesHB6
Hb1
KRTHB1
KRTHB6
MNX
hHb6
HGNC (Hugo) KRT86
LocusID (NCBI) 3892
Atlas_Id 41106
Location 12q13.13
Location_base_pair Starts at 52695649 and ends at 52702947 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KRT86   6463
Cards
Entrez_Gene (NCBI)KRT86  3892  keratin 86, type II
GeneCards (Weizmann)KRT86
Ensembl hg19 (Hinxton)ENSG00000170442 [Gene_View]  chr12:52695649-52702947 [Contig_View]  KRT86 [Vega]
Ensembl hg38 (Hinxton)ENSG00000170442 [Gene_View]  chr12:52695649-52702947 [Contig_View]  KRT86 [Vega]
ICGC DataPortalENSG00000170442
TCGA cBioPortalKRT86
AceView (NCBI)KRT86
Genatlas (Paris)KRT86
WikiGenes3892
SOURCE (Princeton)KRT86
Genomic and cartography
GoldenPath hg19 (UCSC)KRT86  -     chr12:52695649-52702947 +  12q13.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRT86  -     12q13.13   [Description]    (hg38-Dec_2013)
EnsemblKRT86 - 12q13.13 [CytoView hg19]  KRT86 - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIKRT86 [Mapview hg19]  KRT86 [Mapview hg38]
OMIM158000   601928   
Gene and transcription
Genbank (Entrez)AK057905 AK292237 AK297794 BC069585 HQ447461
RefSeq transcript (Entrez)NM_002284
RefSeq genomic (Entrez)NC_000012 NC_018923 NG_008086 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)KRT86
Cluster EST : UnigeneHs.278658 [ NCBI ]
CGAP (NCI)Hs.278658
Alternative Splicing : Fast-db (Paris)GSHG0006678
Alternative Splicing GalleryENSG00000170442
Gene ExpressionKRT86 [ NCBI-GEO ]     KRT86 [ SEEK ]   KRT86 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43790 (Uniprot)
NextProtO43790  [Medical]  [Publications]
With graphics : InterProO43790
Splice isoforms : SwissVarO43790 (Swissvar)
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_II   
Related proteins : CluSTrO43790
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
DMDM Disease mutations3892
Blocks (Seattle)O43790
Human Protein AtlasENSG00000170442
Peptide AtlasO43790
HPRD03567
IPIIPI00182655   
Protein Interaction databases
DIP (DOE-UCLA)O43790
IntAct (EBI)O43790
FunCoupENSG00000170442
BioGRIDKRT86
IntegromeDBKRT86
STRING (EMBL)KRT86
Ontologies - Pathways
QuickGOO43790
Ontology : AmiGOstructural molecule activity  protein binding  extracellular space  keratin filament  extracellular exosome  
Ontology : EGO-EBIstructural molecule activity  protein binding  extracellular space  keratin filament  extracellular exosome  
Protein Interaction DatabaseKRT86
DoCM (Curated mutations)KRT86
Wikipedia pathwaysKRT86
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerKRT86 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT86
dbVarKRT86
ClinVarKRT86
1000_GenomesKRT86 
Exome Variant ServerKRT86
SNP (GeneSNP Utah)KRT86
SNP : HGBaseKRT86
Genetic variants : HAPMAPKRT86
Genomic Variants (DGV)KRT86 [DGVbeta]
Mutations
ICGC Data PortalKRT86 
TCGA Data PortalKRT86 
Tumor PortalKRT86
Somatic Mutations in Cancer : COSMICKRT86 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)12:52695649-52702947
CONAN: Copy Number AnalysisKRT86 
Mutations and Diseases : HGMDKRT86
OMIM158000    601928   
MedgenKRT86
NextProtO43790 [Medical]
GENETestsKRT86
Disease Genetic AssociationKRT86
Huge Navigator KRT86 [HugePedia]  KRT86 [HugeCancerGEM]
snp3D : Map Gene to Disease3892
DGIdb (Drug Gene Interaction db)KRT86
BioCentury BCIQKRT86
General knowledge
Homologs : HomoloGeneKRT86
Homology/Alignments : Family Browser (UCSC)KRT86
Phylogenetic Trees/Animal Genes : TreeFamKRT86
Chemical/Protein Interactions : CTD3892
Chemical/Pharm GKB GenePA30252
Clinical trialKRT86
Cancer Resource (Charite)ENSG00000170442
Other databases
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
CoreMineKRT86
GoPubMedKRT86
iHOPKRT86
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jun 27 11:46:43 CEST 2015

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