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KRT87P (keratin 87 pseudogene)

Identity

Alias_namesKRTHBP4
KRT121P
keratin, hair, basic pseudogene 4
keratin 121 pseudogene
Alias_symbol (synonym)HBD
Other alias
HGNC (Hugo) KRT87P
LocusID (NCBI) 85349
Atlas_Id 77372
Location 12q13.13  [Link to chromosome band 12q13]
Location_base_pair Starts at 52250544 and ends at 52258508 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT87P   30198
Cards
Entrez_Gene (NCBI)KRT87P  85349  keratin 87 pseudogene
AliasesHBD; KRT121P; KRTHBP4
GeneCards (Weizmann)KRT87P
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr12:52250544-52258508 [Contig_View]  KRT87P [Vega]
TCGA cBioPortalKRT87P
AceView (NCBI)KRT87P
Genatlas (Paris)KRT87P
WikiGenes85349
SOURCE (Princeton)KRT87P
Genetics Home Reference (NIH)KRT87P
Genomic and cartography
GoldenPath hg38 (UCSC)KRT87P  -     chr12:52250544-52258508 -  12q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRT87P  -     12q13.13   [Description]    (hg19-Feb_2009)
EnsemblKRT87P - 12q13.13 [CytoView hg19]  KRT87P - 12q13.13 [CytoView hg38]
Mapping of homologs : NCBIKRT87P [Mapview hg19]  KRT87P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK300121 BI828482 BI829625
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRT87P
Cluster EST : UnigeneHs.584773 [ NCBI ]
CGAP (NCI)Hs.584773
Gene ExpressionKRT87P [ NCBI-GEO ]   KRT87P [ EBI - ARRAY_EXPRESS ]   KRT87P [ SEEK ]   KRT87P [ MEM ]
Gene Expression Viewer (FireBrowse)KRT87P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85349
GTEX Portal (Tissue expression)KRT87P
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NCN2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NCN2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NCN2
Splice isoforms : SwissVarA6NCN2
PhosPhoSitePlusA6NCN2
Domains : Interpro (EBI)IF    Keratin_II    Prefoldin   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Domain families : Smart (EMBL)Filament (SM01391)  
Conserved Domain (NCBI)KRT87P
DMDM Disease mutations85349
Blocks (Seattle)KRT87P
SuperfamilyA6NCN2
Peptide AtlasA6NCN2
Protein Interaction databases
DIP (DOE-UCLA)A6NCN2
IntAct (EBI)A6NCN2
BioGRIDKRT87P
STRING (EMBL)KRT87P
ZODIACKRT87P
Ontologies - Pathways
QuickGOA6NCN2
Ontology : AmiGOstructural molecule activity  extracellular space  keratin filament  
Ontology : EGO-EBIstructural molecule activity  extracellular space  keratin filament  
NDEx NetworkKRT87P
Atlas of Cancer Signalling NetworkKRT87P
Wikipedia pathwaysKRT87P
Orthology - Evolution
OrthoDB85349
Phylogenetic Trees/Animal Genes : TreeFamKRT87P
HOVERGENA6NCN2
HOGENOMA6NCN2
Homologs : HomoloGeneKRT87P
Homology/Alignments : Family Browser (UCSC)KRT87P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT87P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT87P
dbVarKRT87P
ClinVarKRT87P
1000_GenomesKRT87P 
Exome Variant ServerKRT87P
ExAC (Exome Aggregation Consortium)KRT87P (select the gene name)
Genetic variants : HAPMAP85349
Genomic Variants (DGV)KRT87P [DGVbeta]
DECIPHERKRT87P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRT87P 
Mutations
ICGC Data PortalKRT87P 
TCGA Data PortalKRT87P 
Broad Tumor PortalKRT87P
OASIS PortalKRT87P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDKRT87P
BioMutasearch KRT87P
DgiDB (Drug Gene Interaction Database)KRT87P
DoCM (Curated mutations)KRT87P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT87P (select a term)
intoGenKRT87P
Cancer3DKRT87P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRT87P
Genetic Testing Registry KRT87P
NextProtA6NCN2 [Medical]
TSGene85349
GENETestsKRT87P
Target ValidationKRT87P
Huge Navigator KRT87P [HugePedia]
snp3D : Map Gene to Disease85349
BioCentury BCIQKRT87P
ClinGenKRT87P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85349
Chemical/Pharm GKB GenePA134941830
Clinical trialKRT87P
Miscellaneous
canSAR (ICR)KRT87P (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT87P
EVEXKRT87P
GoPubMedKRT87P
iHOPKRT87P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:04 CEST 2017

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