Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRT9 (keratin 9)

Identity

Alias_nameskeratin 9
Alias_symbol (synonym)EPPK
K9
CK-9
Other alias
HGNC (Hugo) KRT9
LocusID (NCBI) 3857
Atlas_Id 53376
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 39722094 and ends at 39728310 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SGK3 (8q13.1) / KRT9 (17q21.2)SGK3 8q13.1 / KRT9 17q21.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRT9   6447
Cards
Entrez_Gene (NCBI)KRT9  3857  keratin 9
AliasesCK-9; EPPK; K9
GeneCards (Weizmann)KRT9
Ensembl hg19 (Hinxton)ENSG00000171403 [Gene_View]  chr17:39722094-39728310 [Contig_View]  KRT9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000171403 [Gene_View]  chr17:39722094-39728310 [Contig_View]  KRT9 [Vega]
ICGC DataPortalENSG00000171403
TCGA cBioPortalKRT9
AceView (NCBI)KRT9
Genatlas (Paris)KRT9
WikiGenes3857
SOURCE (Princeton)KRT9
Genetics Home Reference (NIH)KRT9
Genomic and cartography
GoldenPath hg19 (UCSC)KRT9  -     chr17:39722094-39728310 -  17q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRT9  -     17q21.2   [Description]    (hg38-Dec_2013)
EnsemblKRT9 - 17q21.2 [CytoView hg19]  KRT9 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRT9 [Mapview hg19]  KRT9 [Mapview hg38]
OMIM144200   607606   
Gene and transcription
Genbank (Entrez)AB001594 BC121170 BC167813 S69510 Z29074
RefSeq transcript (Entrez)NM_000226
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_008300 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)KRT9
Cluster EST : UnigeneHs.654569 [ NCBI ]
CGAP (NCI)Hs.654569
Alternative Splicing GalleryENSG00000171403
Gene ExpressionKRT9 [ NCBI-GEO ]   KRT9 [ EBI - ARRAY_EXPRESS ]   KRT9 [ SEEK ]   KRT9 [ MEM ]
Gene Expression Viewer (FireBrowse)KRT9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3857
GTEX Portal (Tissue expression)KRT9
Protein : pattern, domain, 3D structure
UniProt/SwissProtP35527   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP35527  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP35527
Splice isoforms : SwissVarP35527
PhosPhoSitePlusP35527
Domaine pattern : Prosite (Expaxy)IF (PS00226)   
Domains : Interpro (EBI)IF    Intermediate_filament_CS    Keratin_I   
Domain families : Pfam (Sanger)Filament (PF00038)   
Domain families : Pfam (NCBI)pfam00038   
Conserved Domain (NCBI)KRT9
DMDM Disease mutations3857
Blocks (Seattle)KRT9
SuperfamilyP35527
Human Protein AtlasENSG00000171403
Peptide AtlasP35527
HPRD06351
IPIIPI00019359   
Protein Interaction databases
DIP (DOE-UCLA)P35527
IntAct (EBI)P35527
FunCoupENSG00000171403
BioGRIDKRT9
STRING (EMBL)KRT9
ZODIACKRT9
Ontologies - Pathways
QuickGOP35527
Ontology : AmiGOstructural constituent of cytoskeleton  extracellular space  nucleus  intermediate filament  spermatogenesis  epidermis development  membrane  skin development  intermediate filament organization  extracellular exosome  
Ontology : EGO-EBIstructural constituent of cytoskeleton  extracellular space  nucleus  intermediate filament  spermatogenesis  epidermis development  membrane  skin development  intermediate filament organization  extracellular exosome  
NDEx NetworkKRT9
Atlas of Cancer Signalling NetworkKRT9
Wikipedia pathwaysKRT9
Orthology - Evolution
OrthoDB3857
GeneTree (enSembl)ENSG00000171403
Phylogenetic Trees/Animal Genes : TreeFamKRT9
HOVERGENP35527
HOGENOMP35527
Homologs : HomoloGeneKRT9
Homology/Alignments : Family Browser (UCSC)KRT9
Gene fusions - Rearrangements
Fusion : MitelmanSGK3/KRT9 [8q13.1/17q21.2]  [t(8;17)(q13;q21)]  
Fusion: TCGASGK3 8q13.1 KRT9 17q21.2 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRT9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRT9
dbVarKRT9
ClinVarKRT9
1000_GenomesKRT9 
Exome Variant ServerKRT9
ExAC (Exome Aggregation Consortium)KRT9 (select the gene name)
Genetic variants : HAPMAP3857
Genomic Variants (DGV)KRT9 [DGVbeta]
DECIPHER (Syndromes)17:39722094-39728310  ENSG00000171403
CONAN: Copy Number AnalysisKRT9 
Mutations
ICGC Data PortalKRT9 
TCGA Data PortalKRT9 
Broad Tumor PortalKRT9
OASIS PortalKRT9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRT9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRT9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)Zhejiang University Center for Genetic and Genomic Medicine (ZJU-CGGM)
BioMutasearch KRT9
DgiDB (Drug Gene Interaction Database)KRT9
DoCM (Curated mutations)KRT9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRT9 (select a term)
intoGenKRT9
Cancer3DKRT9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM144200    607606   
Orphanet2082   
MedgenKRT9
Genetic Testing Registry KRT9
NextProtP35527 [Medical]
TSGene3857
GENETestsKRT9
Huge Navigator KRT9 [HugePedia]
snp3D : Map Gene to Disease3857
BioCentury BCIQKRT9
ClinGenKRT9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3857
Chemical/Pharm GKB GenePA30235
Clinical trialKRT9
Miscellaneous
canSAR (ICR)KRT9 (select the gene name)
Probes
Litterature
PubMed67 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRT9
EVEXKRT9
GoPubMedKRT9
iHOPKRT9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:12:20 CET 2017

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