Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRTAP1-1 (keratin associated protein 1-1)

Identity

Alias_symbol (synonym)KAP1.1B
HB2A
KAP1.1
KAP1.1A
Other aliasKAP1.6
KAP1.7
KRTAP1.1
KRTAP1A
hKAP1.7
HGNC (Hugo) KRTAP1-1
LocusID (NCBI) 81851
Atlas_Id 65062
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41040559 and ends at 41041461 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP1-1   16772
Cards
Entrez_Gene (NCBI)KRTAP1-1  81851  keratin associated protein 1-1
AliasesHB2A; KAP1.1; KAP1.1A; KAP1.1B; 
KAP1.6; KAP1.7; KRTAP1.1; KRTAP1A; hKAP1.7
GeneCards (Weizmann)KRTAP1-1
Ensembl hg19 (Hinxton)ENSG00000188581 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188581 [Gene_View]  chr17:41040559-41041461 [Contig_View]  KRTAP1-1 [Vega]
ICGC DataPortalENSG00000188581
TCGA cBioPortalKRTAP1-1
AceView (NCBI)KRTAP1-1
Genatlas (Paris)KRTAP1-1
WikiGenes81851
SOURCE (Princeton)KRTAP1-1
Genetics Home Reference (NIH)KRTAP1-1
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP1-1  -     chr17:41040559-41041461 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP1-1  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP1-1 - 17q21.2 [CytoView hg19]  KRTAP1-1 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP1-1 [Mapview hg19]  KRTAP1-1 [Mapview hg38]
OMIM608819   
Gene and transcription
Genbank (Entrez)AB052868 AB052934 AB055057 AJ406926 BC069321
RefSeq transcript (Entrez)NM_030967
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP1-1
Cluster EST : UnigeneHs.247934 [ NCBI ]
CGAP (NCI)Hs.247934
Alternative Splicing GalleryENSG00000188581
Gene ExpressionKRTAP1-1 [ NCBI-GEO ]   KRTAP1-1 [ EBI - ARRAY_EXPRESS ]   KRTAP1-1 [ SEEK ]   KRTAP1-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP1-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81851
GTEX Portal (Tissue expression)KRTAP1-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ07627   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ07627  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ07627
Splice isoforms : SwissVarQ07627
PhosPhoSitePlusQ07627
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2 (PF01500)   
Domain families : Pfam (NCBI)pfam01500   
Conserved Domain (NCBI)KRTAP1-1
DMDM Disease mutations81851
Blocks (Seattle)KRTAP1-1
SuperfamilyQ07627
Human Protein AtlasENSG00000188581
Peptide AtlasQ07627
HPRD12304
IPIIPI00008915   IPI01013299   
Protein Interaction databases
DIP (DOE-UCLA)Q07627
IntAct (EBI)Q07627
FunCoupENSG00000188581
BioGRIDKRTAP1-1
STRING (EMBL)KRTAP1-1
ZODIACKRTAP1-1
Ontologies - Pathways
QuickGOQ07627
Ontology : AmiGOcytosol  biological_process  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  biological_process  keratinization  keratin filament  
NDEx NetworkKRTAP1-1
Atlas of Cancer Signalling NetworkKRTAP1-1
Wikipedia pathwaysKRTAP1-1
Orthology - Evolution
OrthoDB81851
GeneTree (enSembl)ENSG00000188581
Phylogenetic Trees/Animal Genes : TreeFamKRTAP1-1
HOVERGENQ07627
HOGENOMQ07627
Homologs : HomoloGeneKRTAP1-1
Homology/Alignments : Family Browser (UCSC)KRTAP1-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP1-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP1-1
dbVarKRTAP1-1
ClinVarKRTAP1-1
1000_GenomesKRTAP1-1 
Exome Variant ServerKRTAP1-1
ExAC (Exome Aggregation Consortium)KRTAP1-1 (select the gene name)
Genetic variants : HAPMAP81851
Genomic Variants (DGV)KRTAP1-1 [DGVbeta]
DECIPHERKRTAP1-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP1-1 
Mutations
ICGC Data PortalKRTAP1-1 
TCGA Data PortalKRTAP1-1 
Broad Tumor PortalKRTAP1-1
OASIS PortalKRTAP1-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP1-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP1-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP1-1
DgiDB (Drug Gene Interaction Database)KRTAP1-1
DoCM (Curated mutations)KRTAP1-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP1-1 (select a term)
intoGenKRTAP1-1
Cancer3DKRTAP1-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608819   
Orphanet
MedgenKRTAP1-1
Genetic Testing Registry KRTAP1-1
NextProtQ07627 [Medical]
TSGene81851
GENETestsKRTAP1-1
Target ValidationKRTAP1-1
Huge Navigator KRTAP1-1 [HugePedia]
snp3D : Map Gene to Disease81851
BioCentury BCIQKRTAP1-1
ClinGenKRTAP1-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81851
Chemical/Pharm GKB GenePA38412
Clinical trialKRTAP1-1
Miscellaneous
canSAR (ICR)KRTAP1-1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP1-1
EVEXKRTAP1-1
GoPubMedKRTAP1-1
iHOPKRTAP1-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:18:44 CEST 2017

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