Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRTAP1-3 (keratin associated protein 1-3)

Identity

Alias_symbol (synonym)KAP1.3
Other aliasKAP1.2
KAP1.6
KAP1.8A
KAP1.8B
KAP1.9
KRTAP1.3
HGNC (Hugo) KRTAP1-3
LocusID (NCBI) 81850
Atlas_Id 65068
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41033885 and ends at 41034855 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP1-3   16771
Cards
Entrez_Gene (NCBI)KRTAP1-3  81850  keratin associated protein 1-3
AliasesKAP1.2; KAP1.3; KAP1.6; KAP1.8A; 
KAP1.8B; KAP1.9; KRTAP1.3
GeneCards (Weizmann)KRTAP1-3
Ensembl hg19 (Hinxton)ENSG00000221880 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221880 [Gene_View]  chr17:41033885-41034855 [Contig_View]  KRTAP1-3 [Vega]
ICGC DataPortalENSG00000221880
TCGA cBioPortalKRTAP1-3
AceView (NCBI)KRTAP1-3
Genatlas (Paris)KRTAP1-3
WikiGenes81850
SOURCE (Princeton)KRTAP1-3
Genetics Home Reference (NIH)KRTAP1-3
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP1-3  -     chr17:41033885-41034855 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP1-3  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP1-3 - 17q21.2 [CytoView hg19]  KRTAP1-3 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP1-3 [Mapview hg19]  KRTAP1-3 [Mapview hg38]
OMIM608820   
Gene and transcription
Genbank (Entrez)AJ406927 BC069161 BC101150 BC101151 BC101152
RefSeq transcript (Entrez)NM_030966
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP1-3
Cluster EST : UnigeneHs.534495 [ NCBI ]
CGAP (NCI)Hs.534495
Alternative Splicing GalleryENSG00000221880
Gene ExpressionKRTAP1-3 [ NCBI-GEO ]   KRTAP1-3 [ EBI - ARRAY_EXPRESS ]   KRTAP1-3 [ SEEK ]   KRTAP1-3 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP1-3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81850
GTEX Portal (Tissue expression)KRTAP1-3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUG1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUG1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUG1
Splice isoforms : SwissVarQ8IUG1
PhosPhoSitePlusQ8IUG1
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2 (PF01500)   
Domain families : Pfam (NCBI)pfam01500   
Conserved Domain (NCBI)KRTAP1-3
DMDM Disease mutations81850
Blocks (Seattle)KRTAP1-3
SuperfamilyQ8IUG1
Human Protein AtlasENSG00000221880
Peptide AtlasQ8IUG1
HPRD12305
IPIIPI00439630   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUG1
IntAct (EBI)Q8IUG1
FunCoupENSG00000221880
BioGRIDKRTAP1-3
STRING (EMBL)KRTAP1-3
ZODIACKRTAP1-3
Ontologies - Pathways
QuickGOQ8IUG1
Ontology : AmiGOcytosol  biological_process  structural constituent of epidermis  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  biological_process  structural constituent of epidermis  keratinization  keratin filament  
NDEx NetworkKRTAP1-3
Atlas of Cancer Signalling NetworkKRTAP1-3
Wikipedia pathwaysKRTAP1-3
Orthology - Evolution
OrthoDB81850
GeneTree (enSembl)ENSG00000221880
Phylogenetic Trees/Animal Genes : TreeFamKRTAP1-3
HOVERGENQ8IUG1
HOGENOMQ8IUG1
Homologs : HomoloGeneKRTAP1-3
Homology/Alignments : Family Browser (UCSC)KRTAP1-3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP1-3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP1-3
dbVarKRTAP1-3
ClinVarKRTAP1-3
1000_GenomesKRTAP1-3 
Exome Variant ServerKRTAP1-3
ExAC (Exome Aggregation Consortium)KRTAP1-3 (select the gene name)
Genetic variants : HAPMAP81850
Genomic Variants (DGV)KRTAP1-3 [DGVbeta]
DECIPHERKRTAP1-3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP1-3 
Mutations
ICGC Data PortalKRTAP1-3 
TCGA Data PortalKRTAP1-3 
Broad Tumor PortalKRTAP1-3
OASIS PortalKRTAP1-3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP1-3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP1-3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP1-3
DgiDB (Drug Gene Interaction Database)KRTAP1-3
DoCM (Curated mutations)KRTAP1-3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP1-3 (select a term)
intoGenKRTAP1-3
Cancer3DKRTAP1-3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608820   
Orphanet
MedgenKRTAP1-3
Genetic Testing Registry KRTAP1-3
NextProtQ8IUG1 [Medical]
TSGene81850
GENETestsKRTAP1-3
Target ValidationKRTAP1-3
Huge Navigator KRTAP1-3 [HugePedia]
snp3D : Map Gene to Disease81850
BioCentury BCIQKRTAP1-3
ClinGenKRTAP1-3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81850
Chemical/Pharm GKB GenePA38411
Clinical trialKRTAP1-3
Miscellaneous
canSAR (ICR)KRTAP1-3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP1-3
EVEXKRTAP1-3
GoPubMedKRTAP1-3
iHOPKRTAP1-3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:15 CEST 2017

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