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KRTAP1-4 (keratin associated protein 1-4)

Identity

Alias_symbol (synonym)KAP1.4
Other aliasKRTAP1.4
HGNC (Hugo) KRTAP1-4
LocusID (NCBI) 728255
Atlas_Id 65073
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 39185929 and ends at 39186377 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP1-4   18904
Cards
Entrez_Gene (NCBI)KRTAP1-4  728255  keratin associated protein 1-4
AliasesKAP1.4; KRTAP1.4
GeneCards (Weizmann)KRTAP1-4
Ensembl hg19 (Hinxton)ENSG00000204887 [Gene_View]  chr17:39185929-39186377 [Contig_View]  KRTAP1-4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204887 [Gene_View]  chr17:39185929-39186377 [Contig_View]  KRTAP1-4 [Vega]
ICGC DataPortalENSG00000204887
TCGA cBioPortalKRTAP1-4
AceView (NCBI)KRTAP1-4
Genatlas (Paris)KRTAP1-4
WikiGenes728255
SOURCE (Princeton)KRTAP1-4
Genetics Home Reference (NIH)KRTAP1-4
Genomic and cartography
GoldenPath hg19 (UCSC)KRTAP1-4  -     chr17:39185929-39186377 -  17q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRTAP1-4  -     17q21.2   [Description]    (hg38-Dec_2013)
EnsemblKRTAP1-4 - 17q21.2 [CytoView hg19]  KRTAP1-4 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP1-4 [Mapview hg19]  KRTAP1-4 [Mapview hg38]
OMIM608821   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001257305
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_003871091 NW_004929407
Consensus coding sequences : CCDS (NCBI)KRTAP1-4
Cluster EST : UnigeneHs.744827 [ NCBI ]
CGAP (NCI)Hs.744827
Alternative Splicing GalleryENSG00000204887
Gene ExpressionKRTAP1-4 [ NCBI-GEO ]   KRTAP1-4 [ EBI - ARRAY_EXPRESS ]   KRTAP1-4 [ SEEK ]   KRTAP1-4 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP1-4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728255
GTEX Portal (Tissue expression)KRTAP1-4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C5Y4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C5Y4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C5Y4
Splice isoforms : SwissVarP0C5Y4
PhosPhoSitePlusP0C5Y4
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2 (PF01500)   
Domain families : Pfam (NCBI)pfam01500   
Conserved Domain (NCBI)KRTAP1-4
DMDM Disease mutations728255
Blocks (Seattle)KRTAP1-4
SuperfamilyP0C5Y4
Human Protein AtlasENSG00000204887
Peptide AtlasP0C5Y4
IPIIPI00930412   
Protein Interaction databases
DIP (DOE-UCLA)P0C5Y4
IntAct (EBI)P0C5Y4
FunCoupENSG00000204887
BioGRIDKRTAP1-4
STRING (EMBL)KRTAP1-4
ZODIACKRTAP1-4
Ontologies - Pathways
QuickGOP0C5Y4
Ontology : AmiGOkeratin filament  
Ontology : EGO-EBIkeratin filament  
NDEx NetworkKRTAP1-4
Atlas of Cancer Signalling NetworkKRTAP1-4
Wikipedia pathwaysKRTAP1-4
Orthology - Evolution
OrthoDB728255
GeneTree (enSembl)ENSG00000204887
Phylogenetic Trees/Animal Genes : TreeFamKRTAP1-4
HOVERGENP0C5Y4
HOGENOMP0C5Y4
Homologs : HomoloGeneKRTAP1-4
Homology/Alignments : Family Browser (UCSC)KRTAP1-4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP1-4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP1-4
dbVarKRTAP1-4
ClinVarKRTAP1-4
1000_GenomesKRTAP1-4 
Exome Variant ServerKRTAP1-4
ExAC (Exome Aggregation Consortium)KRTAP1-4 (select the gene name)
Genetic variants : HAPMAP728255
Genomic Variants (DGV)KRTAP1-4 [DGVbeta]
DECIPHER (Syndromes)17:39185929-39186377  ENSG00000204887
CONAN: Copy Number AnalysisKRTAP1-4 
Mutations
ICGC Data PortalKRTAP1-4 
TCGA Data PortalKRTAP1-4 
Broad Tumor PortalKRTAP1-4
OASIS PortalKRTAP1-4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP1-4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP1-4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP1-4
DgiDB (Drug Gene Interaction Database)KRTAP1-4
DoCM (Curated mutations)KRTAP1-4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP1-4 (select a term)
intoGenKRTAP1-4
Cancer3DKRTAP1-4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608821   
Orphanet
MedgenKRTAP1-4
Genetic Testing Registry KRTAP1-4
NextProtP0C5Y4 [Medical]
TSGene728255
GENETestsKRTAP1-4
Huge Navigator KRTAP1-4 [HugePedia]
snp3D : Map Gene to Disease728255
BioCentury BCIQKRTAP1-4
ClinGenKRTAP1-4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728255
Chemical/Pharm GKB GenePA38752
Clinical trialKRTAP1-4
Miscellaneous
canSAR (ICR)KRTAP1-4 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP1-4
EVEXKRTAP1-4
GoPubMedKRTAP1-4
iHOPKRTAP1-4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:10:24 CET 2017

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