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KRTAP1-5 (keratin associated protein 1-5)

Identity

Alias_symbol (synonym)KAP1.5
Other aliasKRTAP1.5
HGNC (Hugo) KRTAP1-5
LocusID (NCBI) 83895
Atlas_Id 65074
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41026026 and ends at 41027202 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP1-5   16777
Cards
Entrez_Gene (NCBI)KRTAP1-5  83895  keratin associated protein 1-5
AliasesKAP1.5; KRTAP1.5
GeneCards (Weizmann)KRTAP1-5
Ensembl hg19 (Hinxton)ENSG00000221852 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221852 [Gene_View]  chr17:41026026-41027202 [Contig_View]  KRTAP1-5 [Vega]
ICGC DataPortalENSG00000221852
TCGA cBioPortalKRTAP1-5
AceView (NCBI)KRTAP1-5
Genatlas (Paris)KRTAP1-5
WikiGenes83895
SOURCE (Princeton)KRTAP1-5
Genetics Home Reference (NIH)KRTAP1-5
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP1-5  -     chr17:41026026-41027202 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP1-5  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP1-5 - 17q21.2 [CytoView hg19]  KRTAP1-5 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP1-5 [Mapview hg19]  KRTAP1-5 [Mapview hg38]
OMIM608822   
Gene and transcription
Genbank (Entrez)AJ406928 BC069533 BC093841 BC101555
RefSeq transcript (Entrez)NM_031957
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP1-5
Cluster EST : UnigeneHs.534499 [ NCBI ]
CGAP (NCI)Hs.534499
Alternative Splicing GalleryENSG00000221852
Gene ExpressionKRTAP1-5 [ NCBI-GEO ]   KRTAP1-5 [ EBI - ARRAY_EXPRESS ]   KRTAP1-5 [ SEEK ]   KRTAP1-5 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP1-5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83895
GTEX Portal (Tissue expression)KRTAP1-5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYS1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYS1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYS1
Splice isoforms : SwissVarQ9BYS1
PhosPhoSitePlusQ9BYS1
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2 (PF01500)   
Domain families : Pfam (NCBI)pfam01500   
Conserved Domain (NCBI)KRTAP1-5
DMDM Disease mutations83895
Blocks (Seattle)KRTAP1-5
SuperfamilyQ9BYS1
Human Protein AtlasENSG00000221852
Peptide AtlasQ9BYS1
HPRD12306
IPIIPI00011211   IPI01012717   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYS1
IntAct (EBI)Q9BYS1
FunCoupENSG00000221852
BioGRIDKRTAP1-5
STRING (EMBL)KRTAP1-5
ZODIACKRTAP1-5
Ontologies - Pathways
QuickGOQ9BYS1
Ontology : AmiGOmolecular_function  protein binding  cellular_component  cytosol  biological_process  keratinization  keratin filament  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  cytosol  biological_process  keratinization  keratin filament  
NDEx NetworkKRTAP1-5
Atlas of Cancer Signalling NetworkKRTAP1-5
Wikipedia pathwaysKRTAP1-5
Orthology - Evolution
OrthoDB83895
GeneTree (enSembl)ENSG00000221852
Phylogenetic Trees/Animal Genes : TreeFamKRTAP1-5
HOVERGENQ9BYS1
HOGENOMQ9BYS1
Homologs : HomoloGeneKRTAP1-5
Homology/Alignments : Family Browser (UCSC)KRTAP1-5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP1-5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP1-5
dbVarKRTAP1-5
ClinVarKRTAP1-5
1000_GenomesKRTAP1-5 
Exome Variant ServerKRTAP1-5
ExAC (Exome Aggregation Consortium)KRTAP1-5 (select the gene name)
Genetic variants : HAPMAP83895
Genomic Variants (DGV)KRTAP1-5 [DGVbeta]
DECIPHERKRTAP1-5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP1-5 
Mutations
ICGC Data PortalKRTAP1-5 
TCGA Data PortalKRTAP1-5 
Broad Tumor PortalKRTAP1-5
OASIS PortalKRTAP1-5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP1-5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP1-5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP1-5
DgiDB (Drug Gene Interaction Database)KRTAP1-5
DoCM (Curated mutations)KRTAP1-5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP1-5 (select a term)
intoGenKRTAP1-5
Cancer3DKRTAP1-5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608822   
Orphanet
MedgenKRTAP1-5
Genetic Testing Registry KRTAP1-5
NextProtQ9BYS1 [Medical]
TSGene83895
GENETestsKRTAP1-5
Target ValidationKRTAP1-5
Huge Navigator KRTAP1-5 [HugePedia]
snp3D : Map Gene to Disease83895
BioCentury BCIQKRTAP1-5
ClinGenKRTAP1-5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83895
Chemical/Pharm GKB GenePA38417
Clinical trialKRTAP1-5
Miscellaneous
canSAR (ICR)KRTAP1-5 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP1-5
EVEXKRTAP1-5
GoPubMedKRTAP1-5
iHOPKRTAP1-5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:18:46 CEST 2017

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