Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRTAP10-1 (keratin associated protein 10-1)

Identity

Alias_namesKRTAP18-1
Alias_symbol (synonym)KAP10.1
KAP18.1
Other aliasKAP18-1
KRTAP10.1
KRTAP18.1
HGNC (Hugo) KRTAP10-1
LocusID (NCBI) 386677
Atlas_Id 65050
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 45959068 and ends at 45960078 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP10-1   22966
Cards
Entrez_Gene (NCBI)KRTAP10-1  386677  keratin associated protein 10-1
AliasesKAP10.1; KAP18-1; KAP18.1; KRTAP10.1; 
KRTAP18-1; KRTAP18.1
GeneCards (Weizmann)KRTAP10-1
Ensembl hg19 (Hinxton)ENSG00000215455 [Gene_View]  chr21:45959068-45960078 [Contig_View]  KRTAP10-1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000215455 [Gene_View]  chr21:45959068-45960078 [Contig_View]  KRTAP10-1 [Vega]
ICGC DataPortalENSG00000215455
TCGA cBioPortalKRTAP10-1
AceView (NCBI)KRTAP10-1
Genatlas (Paris)KRTAP10-1
WikiGenes386677
SOURCE (Princeton)KRTAP10-1
Genetics Home Reference (NIH)KRTAP10-1
Genomic and cartography
GoldenPath hg19 (UCSC)KRTAP10-1  -     chr21:45959068-45960078 -  21q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRTAP10-1  -     21q22.3   [Description]    (hg38-Dec_2013)
EnsemblKRTAP10-1 - 21q22.3 [CytoView hg19]  KRTAP10-1 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIKRTAP10-1 [Mapview hg19]  KRTAP10-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB076347 AJ566380 BC120959 BC120960
RefSeq transcript (Entrez)NM_198691
RefSeq genomic (Entrez)NC_000021 NC_018932 NG_033806 NT_011512 NW_004929427
Consensus coding sequences : CCDS (NCBI)KRTAP10-1
Cluster EST : UnigeneHs.688631 [ NCBI ]
CGAP (NCI)Hs.688631
Alternative Splicing GalleryENSG00000215455
Gene ExpressionKRTAP10-1 [ NCBI-GEO ]   KRTAP10-1 [ EBI - ARRAY_EXPRESS ]   KRTAP10-1 [ SEEK ]   KRTAP10-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP10-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)386677
GTEX Portal (Tissue expression)KRTAP10-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60331   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60331  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60331
Splice isoforms : SwissVarP60331
PhosPhoSitePlusP60331
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP10-1
DMDM Disease mutations386677
Blocks (Seattle)KRTAP10-1
SuperfamilyP60331
Human Protein AtlasENSG00000215455
Peptide AtlasP60331
HPRD11184
IPIIPI00394673   IPI01012669   
Protein Interaction databases
DIP (DOE-UCLA)P60331
IntAct (EBI)P60331
FunCoupENSG00000215455
BioGRIDKRTAP10-1
STRING (EMBL)KRTAP10-1
ZODIACKRTAP10-1
Ontologies - Pathways
QuickGOP60331
Ontology : AmiGOkeratin filament  
Ontology : EGO-EBIkeratin filament  
NDEx NetworkKRTAP10-1
Atlas of Cancer Signalling NetworkKRTAP10-1
Wikipedia pathwaysKRTAP10-1
Orthology - Evolution
OrthoDB386677
GeneTree (enSembl)ENSG00000215455
Phylogenetic Trees/Animal Genes : TreeFamKRTAP10-1
HOVERGENP60331
HOGENOMP60331
Homologs : HomoloGeneKRTAP10-1
Homology/Alignments : Family Browser (UCSC)KRTAP10-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP10-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP10-1
dbVarKRTAP10-1
ClinVarKRTAP10-1
1000_GenomesKRTAP10-1 
Exome Variant ServerKRTAP10-1
ExAC (Exome Aggregation Consortium)KRTAP10-1 (select the gene name)
Genetic variants : HAPMAP386677
Genomic Variants (DGV)KRTAP10-1 [DGVbeta]
DECIPHER (Syndromes)21:45959068-45960078  ENSG00000215455
CONAN: Copy Number AnalysisKRTAP10-1 
Mutations
ICGC Data PortalKRTAP10-1 
TCGA Data PortalKRTAP10-1 
Broad Tumor PortalKRTAP10-1
OASIS PortalKRTAP10-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP10-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP10-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP10-1
DgiDB (Drug Gene Interaction Database)KRTAP10-1
DoCM (Curated mutations)KRTAP10-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP10-1 (select a term)
intoGenKRTAP10-1
Cancer3DKRTAP10-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP10-1
Genetic Testing Registry KRTAP10-1
NextProtP60331 [Medical]
TSGene386677
GENETestsKRTAP10-1
Huge Navigator KRTAP10-1 [HugePedia]
snp3D : Map Gene to Disease386677
BioCentury BCIQKRTAP10-1
ClinGenKRTAP10-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD386677
Chemical/Pharm GKB GenePA134884303
Clinical trialKRTAP10-1
Miscellaneous
canSAR (ICR)KRTAP10-1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP10-1
EVEXKRTAP10-1
GoPubMedKRTAP10-1
iHOPKRTAP10-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:10:19 CET 2017

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