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KRTAP10-10 (keratin associated protein 10-10)

Identity

Alias_symbol (synonym)KAP10.10
KAP18.10
KRTAP18-10
Other aliasKRTAP18.10
HGNC (Hugo) KRTAP10-10
LocusID (NCBI) 353333
Atlas_Id 65051
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 44637356 and ends at 44638455 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP10-10   22972
Cards
Entrez_Gene (NCBI)KRTAP10-10  353333  keratin associated protein 10-10
AliasesKAP10.10; KAP18.10; KRTAP18-10; KRTAP18.10
GeneCards (Weizmann)KRTAP10-10
Ensembl hg19 (Hinxton)ENSG00000221859 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221859 [Gene_View]  chr21:44637356-44638455 [Contig_View]  KRTAP10-10 [Vega]
ICGC DataPortalENSG00000221859
TCGA cBioPortalKRTAP10-10
AceView (NCBI)KRTAP10-10
Genatlas (Paris)KRTAP10-10
WikiGenes353333
SOURCE (Princeton)KRTAP10-10
Genetics Home Reference (NIH)KRTAP10-10
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP10-10  -     chr21:44637356-44638455 +  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP10-10  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblKRTAP10-10 - 21q22.3 [CytoView hg19]  KRTAP10-10 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIKRTAP10-10 [Mapview hg19]  KRTAP10-10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB076358 AJ566387 BC156523 BC172516
RefSeq transcript (Entrez)NM_181688
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP10-10
Cluster EST : UnigeneHs.474001 [ NCBI ]
CGAP (NCI)Hs.474001
Alternative Splicing GalleryENSG00000221859
Gene ExpressionKRTAP10-10 [ NCBI-GEO ]   KRTAP10-10 [ EBI - ARRAY_EXPRESS ]   KRTAP10-10 [ SEEK ]   KRTAP10-10 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP10-10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353333
GTEX Portal (Tissue expression)KRTAP10-10
Human Protein AtlasENSG00000221859-KRTAP10-10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60014   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60014  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60014
Splice isoforms : SwissVarP60014
PhosPhoSitePlusP60014
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP10-10
DMDM Disease mutations353333
Blocks (Seattle)KRTAP10-10
SuperfamilyP60014
Human Protein Atlas [tissue]ENSG00000221859-KRTAP10-10 [tissue]
Peptide AtlasP60014
HPRD11185
IPIIPI00375325   
Protein Interaction databases
DIP (DOE-UCLA)P60014
IntAct (EBI)P60014
FunCoupENSG00000221859
BioGRIDKRTAP10-10
STRING (EMBL)KRTAP10-10
ZODIACKRTAP10-10
Ontologies - Pathways
QuickGOP60014
Ontology : AmiGOcytosol  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  keratinization  keratin filament  
NDEx NetworkKRTAP10-10
Atlas of Cancer Signalling NetworkKRTAP10-10
Wikipedia pathwaysKRTAP10-10
Orthology - Evolution
OrthoDB353333
GeneTree (enSembl)ENSG00000221859
Phylogenetic Trees/Animal Genes : TreeFamKRTAP10-10
HOVERGENP60014
HOGENOMP60014
Homologs : HomoloGeneKRTAP10-10
Homology/Alignments : Family Browser (UCSC)KRTAP10-10
Gene fusions - Rearrangements
Fusion: Tumor Portal KRTAP10-10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP10-10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP10-10
dbVarKRTAP10-10
ClinVarKRTAP10-10
1000_GenomesKRTAP10-10 
Exome Variant ServerKRTAP10-10
ExAC (Exome Aggregation Consortium)ENSG00000221859
GNOMAD BrowserENSG00000221859
Genetic variants : HAPMAP353333
Genomic Variants (DGV)KRTAP10-10 [DGVbeta]
DECIPHERKRTAP10-10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP10-10 
Mutations
ICGC Data PortalKRTAP10-10 
TCGA Data PortalKRTAP10-10 
Broad Tumor PortalKRTAP10-10
OASIS PortalKRTAP10-10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP10-10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP10-10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP10-10
DgiDB (Drug Gene Interaction Database)KRTAP10-10
DoCM (Curated mutations)KRTAP10-10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP10-10 (select a term)
intoGenKRTAP10-10
Cancer3DKRTAP10-10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP10-10
Genetic Testing Registry KRTAP10-10
NextProtP60014 [Medical]
TSGene353333
GENETestsKRTAP10-10
Target ValidationKRTAP10-10
Huge Navigator KRTAP10-10 [HugePedia]
snp3D : Map Gene to Disease353333
BioCentury BCIQKRTAP10-10
ClinGenKRTAP10-10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353333
Chemical/Pharm GKB GenePA134906562
Clinical trialKRTAP10-10
Miscellaneous
canSAR (ICR)KRTAP10-10 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP10-10
EVEXKRTAP10-10
GoPubMedKRTAP10-10
iHOPKRTAP10-10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:52:57 CET 2017

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