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KRTAP10-11 (keratin associated protein 10-11)

Identity

Alias_namesKRTAP18-11
keratin associated protein 10-11
Alias_symbol (synonym)KRTAP18.11
KAP18.11
KAP10.11
Other alias
HGNC (Hugo) KRTAP10-11
LocusID (NCBI) 386678
Atlas_Id 65052
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 46066331 and ends at 46067566 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP10-11   20528
Cards
Entrez_Gene (NCBI)KRTAP10-11  386678  keratin associated protein 10-11
AliasesKAP10.11; KAP18.11; KRTAP18-11; KRTAP18.11
GeneCards (Weizmann)KRTAP10-11
Ensembl hg19 (Hinxton)ENSG00000243489 [Gene_View]  chr21:46066331-46067566 [Contig_View]  KRTAP10-11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000243489 [Gene_View]  chr21:46066331-46067566 [Contig_View]  KRTAP10-11 [Vega]
ICGC DataPortalENSG00000243489
TCGA cBioPortalKRTAP10-11
AceView (NCBI)KRTAP10-11
Genatlas (Paris)KRTAP10-11
WikiGenes386678
SOURCE (Princeton)KRTAP10-11
Genetics Home Reference (NIH)KRTAP10-11
Genomic and cartography
GoldenPath hg19 (UCSC)KRTAP10-11  -     chr21:46066331-46067566 +  21q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRTAP10-11  -     21q22.3   [Description]    (hg38-Dec_2013)
EnsemblKRTAP10-11 - 21q22.3 [CytoView hg19]  KRTAP10-11 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIKRTAP10-11 [Mapview hg19]  KRTAP10-11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB076359 AF086314 BC131611 BX103563
RefSeq transcript (Entrez)NM_198692
RefSeq genomic (Entrez)NC_000021 NC_018932 NG_033806 NT_011512 NW_004929427
Consensus coding sequences : CCDS (NCBI)KRTAP10-11
Cluster EST : UnigeneHs.58076 [ NCBI ]
CGAP (NCI)Hs.58076
Alternative Splicing GalleryENSG00000243489
Gene ExpressionKRTAP10-11 [ NCBI-GEO ]   KRTAP10-11 [ EBI - ARRAY_EXPRESS ]   KRTAP10-11 [ SEEK ]   KRTAP10-11 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP10-11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)386678
GTEX Portal (Tissue expression)KRTAP10-11
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60412   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60412  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60412
Splice isoforms : SwissVarP60412
PhosPhoSitePlusP60412
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP10-11
DMDM Disease mutations386678
Blocks (Seattle)KRTAP10-11
SuperfamilyP60412
Human Protein AtlasENSG00000243489
Peptide AtlasP60412
HPRD11186
IPIIPI00394674   
Protein Interaction databases
DIP (DOE-UCLA)P60412
IntAct (EBI)P60412
FunCoupENSG00000243489
BioGRIDKRTAP10-11
STRING (EMBL)KRTAP10-11
ZODIACKRTAP10-11
Ontologies - Pathways
QuickGOP60412
Ontology : AmiGOprotein binding  keratin filament  
Ontology : EGO-EBIprotein binding  keratin filament  
NDEx NetworkKRTAP10-11
Atlas of Cancer Signalling NetworkKRTAP10-11
Wikipedia pathwaysKRTAP10-11
Orthology - Evolution
OrthoDB386678
GeneTree (enSembl)ENSG00000243489
Phylogenetic Trees/Animal Genes : TreeFamKRTAP10-11
HOVERGENP60412
HOGENOMP60412
Homologs : HomoloGeneKRTAP10-11
Homology/Alignments : Family Browser (UCSC)KRTAP10-11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP10-11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP10-11
dbVarKRTAP10-11
ClinVarKRTAP10-11
1000_GenomesKRTAP10-11 
Exome Variant ServerKRTAP10-11
ExAC (Exome Aggregation Consortium)KRTAP10-11 (select the gene name)
Genetic variants : HAPMAP386678
Genomic Variants (DGV)KRTAP10-11 [DGVbeta]
DECIPHER (Syndromes)21:46066331-46067566  ENSG00000243489
CONAN: Copy Number AnalysisKRTAP10-11 
Mutations
ICGC Data PortalKRTAP10-11 
TCGA Data PortalKRTAP10-11 
Broad Tumor PortalKRTAP10-11
OASIS PortalKRTAP10-11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP10-11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP10-11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP10-11
DgiDB (Drug Gene Interaction Database)KRTAP10-11
DoCM (Curated mutations)KRTAP10-11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP10-11 (select a term)
intoGenKRTAP10-11
Cancer3DKRTAP10-11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP10-11
Genetic Testing Registry KRTAP10-11
NextProtP60412 [Medical]
TSGene386678
GENETestsKRTAP10-11
Huge Navigator KRTAP10-11 [HugePedia]
snp3D : Map Gene to Disease386678
BioCentury BCIQKRTAP10-11
ClinGenKRTAP10-11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD386678
Chemical/Pharm GKB GenePA134873081
Clinical trialKRTAP10-11
Miscellaneous
canSAR (ICR)KRTAP10-11 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP10-11
EVEXKRTAP10-11
GoPubMedKRTAP10-11
iHOPKRTAP10-11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:10:19 CET 2017

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