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KRTAP10-12 (keratin associated protein 10-12)

Identity

Alias_namesKRTAP18-12
keratin associated protein 18-12
Alias_symbol (synonym)KRTAP18.12
KAP10.12
Other alias
HGNC (Hugo) KRTAP10-12
LocusID (NCBI) 386685
Atlas_Id 65053
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 46117087 and ends at 46117959 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP10-12   20533
Cards
Entrez_Gene (NCBI)KRTAP10-12  386685  keratin associated protein 10-12
AliasesKAP10.12; KRTAP18-12; KRTAP18.12
GeneCards (Weizmann)KRTAP10-12
Ensembl hg19 (Hinxton)ENSG00000189169 [Gene_View]  chr21:46117087-46117959 [Contig_View]  KRTAP10-12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000189169 [Gene_View]  chr21:46117087-46117959 [Contig_View]  KRTAP10-12 [Vega]
ICGC DataPortalENSG00000189169
TCGA cBioPortalKRTAP10-12
AceView (NCBI)KRTAP10-12
Genatlas (Paris)KRTAP10-12
WikiGenes386685
SOURCE (Princeton)KRTAP10-12
Genetics Home Reference (NIH)KRTAP10-12
Genomic and cartography
GoldenPath hg19 (UCSC)KRTAP10-12  -     chr21:46117087-46117959 +  21q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRTAP10-12  -     21q22.3   [Description]    (hg38-Dec_2013)
EnsemblKRTAP10-12 - 21q22.3 [CytoView hg19]  KRTAP10-12 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIKRTAP10-12 [Mapview hg19]  KRTAP10-12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB076364 BC137339 BC137341
RefSeq transcript (Entrez)NM_198699
RefSeq genomic (Entrez)NC_000021 NC_018932 NG_033806 NT_011512 NW_004929427
Consensus coding sequences : CCDS (NCBI)KRTAP10-12
Cluster EST : UnigeneHs.297526 [ NCBI ]
CGAP (NCI)Hs.297526
Alternative Splicing GalleryENSG00000189169
Gene ExpressionKRTAP10-12 [ NCBI-GEO ]   KRTAP10-12 [ EBI - ARRAY_EXPRESS ]   KRTAP10-12 [ SEEK ]   KRTAP10-12 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP10-12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)386685
GTEX Portal (Tissue expression)KRTAP10-12
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60413   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60413  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60413
Splice isoforms : SwissVarP60413
PhosPhoSitePlusP60413
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP10-12
DMDM Disease mutations386685
Blocks (Seattle)KRTAP10-12
SuperfamilyP60413
Human Protein AtlasENSG00000189169
Peptide AtlasP60413
HPRD11187
IPIIPI00394683   IPI00940409   
Protein Interaction databases
DIP (DOE-UCLA)P60413
IntAct (EBI)P60413
FunCoupENSG00000189169
BioGRIDKRTAP10-12
STRING (EMBL)KRTAP10-12
ZODIACKRTAP10-12
Ontologies - Pathways
QuickGOP60413
Ontology : AmiGOkeratin filament  
Ontology : EGO-EBIkeratin filament  
NDEx NetworkKRTAP10-12
Atlas of Cancer Signalling NetworkKRTAP10-12
Wikipedia pathwaysKRTAP10-12
Orthology - Evolution
OrthoDB386685
GeneTree (enSembl)ENSG00000189169
Phylogenetic Trees/Animal Genes : TreeFamKRTAP10-12
HOVERGENP60413
HOGENOMP60413
Homologs : HomoloGeneKRTAP10-12
Homology/Alignments : Family Browser (UCSC)KRTAP10-12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP10-12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP10-12
dbVarKRTAP10-12
ClinVarKRTAP10-12
1000_GenomesKRTAP10-12 
Exome Variant ServerKRTAP10-12
ExAC (Exome Aggregation Consortium)KRTAP10-12 (select the gene name)
Genetic variants : HAPMAP386685
Genomic Variants (DGV)KRTAP10-12 [DGVbeta]
DECIPHER (Syndromes)21:46117087-46117959  ENSG00000189169
CONAN: Copy Number AnalysisKRTAP10-12 
Mutations
ICGC Data PortalKRTAP10-12 
TCGA Data PortalKRTAP10-12 
Broad Tumor PortalKRTAP10-12
OASIS PortalKRTAP10-12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP10-12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP10-12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP10-12
DgiDB (Drug Gene Interaction Database)KRTAP10-12
DoCM (Curated mutations)KRTAP10-12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP10-12 (select a term)
intoGenKRTAP10-12
Cancer3DKRTAP10-12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP10-12
Genetic Testing Registry KRTAP10-12
NextProtP60413 [Medical]
TSGene386685
GENETestsKRTAP10-12
Huge Navigator KRTAP10-12 [HugePedia]
snp3D : Map Gene to Disease386685
BioCentury BCIQKRTAP10-12
ClinGenKRTAP10-12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD386685
Chemical/Pharm GKB GenePA134977717
Clinical trialKRTAP10-12
Miscellaneous
canSAR (ICR)KRTAP10-12 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP10-12
EVEXKRTAP10-12
GoPubMedKRTAP10-12
iHOPKRTAP10-12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:10:19 CET 2017

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