Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRTAP10-2 (keratin associated protein 10-2)

Identity

Alias_namesKRTAP18-2
Alias_symbol (synonym)KAP10.2
KAP18.2
Other aliasKAP18-2
KRTAP10.2
KRTAP18.2
HGNC (Hugo) KRTAP10-2
LocusID (NCBI) 386679
Atlas_Id 65054
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 45970240 and ends at 45971388 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP10-2   22967
Cards
Entrez_Gene (NCBI)KRTAP10-2  386679  keratin associated protein 10-2
AliasesKAP10.2; KAP18-2; KAP18.2; KRTAP10.2; 
KRTAP18-2; KRTAP18.2
GeneCards (Weizmann)KRTAP10-2
Ensembl hg19 (Hinxton)ENSG00000205445 [Gene_View]  chr21:45970240-45971388 [Contig_View]  KRTAP10-2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000205445 [Gene_View]  chr21:45970240-45971388 [Contig_View]  KRTAP10-2 [Vega]
ICGC DataPortalENSG00000205445
TCGA cBioPortalKRTAP10-2
AceView (NCBI)KRTAP10-2
Genatlas (Paris)KRTAP10-2
WikiGenes386679
SOURCE (Princeton)KRTAP10-2
Genetics Home Reference (NIH)KRTAP10-2
Genomic and cartography
GoldenPath hg19 (UCSC)KRTAP10-2  -     chr21:45970240-45971388 -  21q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRTAP10-2  -     21q22.3   [Description]    (hg38-Dec_2013)
EnsemblKRTAP10-2 - 21q22.3 [CytoView hg19]  KRTAP10-2 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIKRTAP10-2 [Mapview hg19]  KRTAP10-2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB076348 AB076349 AJ566381 BC146372 BC146565
RefSeq transcript (Entrez)NM_198693
RefSeq genomic (Entrez)NC_000021 NC_018932 NG_033806 NT_011512 NW_004929427
Consensus coding sequences : CCDS (NCBI)KRTAP10-2
Cluster EST : UnigeneHs.689667 [ NCBI ]
CGAP (NCI)Hs.689667
Alternative Splicing GalleryENSG00000205445
Gene ExpressionKRTAP10-2 [ NCBI-GEO ]   KRTAP10-2 [ EBI - ARRAY_EXPRESS ]   KRTAP10-2 [ SEEK ]   KRTAP10-2 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP10-2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)386679
GTEX Portal (Tissue expression)KRTAP10-2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60368   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60368  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60368
Splice isoforms : SwissVarP60368
PhosPhoSitePlusP60368
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP10-2
DMDM Disease mutations386679
Blocks (Seattle)KRTAP10-2
SuperfamilyP60368
Human Protein AtlasENSG00000205445
Peptide AtlasP60368
HPRD11188
IPIIPI00397659   IPI00448941   
Protein Interaction databases
DIP (DOE-UCLA)P60368
IntAct (EBI)P60368
FunCoupENSG00000205445
BioGRIDKRTAP10-2
STRING (EMBL)KRTAP10-2
ZODIACKRTAP10-2
Ontologies - Pathways
QuickGOP60368
Ontology : AmiGOkeratin filament  
Ontology : EGO-EBIkeratin filament  
NDEx NetworkKRTAP10-2
Atlas of Cancer Signalling NetworkKRTAP10-2
Wikipedia pathwaysKRTAP10-2
Orthology - Evolution
OrthoDB386679
GeneTree (enSembl)ENSG00000205445
Phylogenetic Trees/Animal Genes : TreeFamKRTAP10-2
HOVERGENP60368
HOGENOMP60368
Homologs : HomoloGeneKRTAP10-2
Homology/Alignments : Family Browser (UCSC)KRTAP10-2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP10-2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP10-2
dbVarKRTAP10-2
ClinVarKRTAP10-2
1000_GenomesKRTAP10-2 
Exome Variant ServerKRTAP10-2
ExAC (Exome Aggregation Consortium)KRTAP10-2 (select the gene name)
Genetic variants : HAPMAP386679
Genomic Variants (DGV)KRTAP10-2 [DGVbeta]
DECIPHER (Syndromes)21:45970240-45971388  ENSG00000205445
CONAN: Copy Number AnalysisKRTAP10-2 
Mutations
ICGC Data PortalKRTAP10-2 
TCGA Data PortalKRTAP10-2 
Broad Tumor PortalKRTAP10-2
OASIS PortalKRTAP10-2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP10-2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP10-2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP10-2
DgiDB (Drug Gene Interaction Database)KRTAP10-2
DoCM (Curated mutations)KRTAP10-2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP10-2 (select a term)
intoGenKRTAP10-2
Cancer3DKRTAP10-2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP10-2
Genetic Testing Registry KRTAP10-2
NextProtP60368 [Medical]
TSGene386679
GENETestsKRTAP10-2
Huge Navigator KRTAP10-2 [HugePedia]
snp3D : Map Gene to Disease386679
BioCentury BCIQKRTAP10-2
ClinGenKRTAP10-2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD386679
Chemical/Pharm GKB GenePA134989110
Clinical trialKRTAP10-2
Miscellaneous
canSAR (ICR)KRTAP10-2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP10-2
EVEXKRTAP10-2
GoPubMedKRTAP10-2
iHOPKRTAP10-2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:10:20 CET 2017

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