Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KRTAP10-4 (keratin associated protein 10-4)

Identity

Alias_namesKRTAP18-4
keratin associated protein 18-4
Alias_symbol (synonym)KRTAP18.4
KAP10.4
Other aliasKAP18-4
KRTAP10.4
HGNC (Hugo) KRTAP10-4
LocusID (NCBI) 386672
Atlas_Id 65056
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 45993606 and ends at 45995248 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP10-4   20521
Cards
Entrez_Gene (NCBI)KRTAP10-4  386672  keratin associated protein 10-4
AliasesKAP10.4; KAP18-4; KRTAP10.4; KRTAP18-4; 
KRTAP18.4
GeneCards (Weizmann)KRTAP10-4
Ensembl hg19 (Hinxton)ENSG00000215454 [Gene_View]  chr21:45993606-45995248 [Contig_View]  KRTAP10-4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000215454 [Gene_View]  chr21:45993606-45995248 [Contig_View]  KRTAP10-4 [Vega]
ICGC DataPortalENSG00000215454
TCGA cBioPortalKRTAP10-4
AceView (NCBI)KRTAP10-4
Genatlas (Paris)KRTAP10-4
WikiGenes386672
SOURCE (Princeton)KRTAP10-4
Genetics Home Reference (NIH)KRTAP10-4
Genomic and cartography
GoldenPath hg19 (UCSC)KRTAP10-4  -     chr21:45993606-45995248 +  21q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRTAP10-4  -     21q22.3   [Description]    (hg38-Dec_2013)
EnsemblKRTAP10-4 - 21q22.3 [CytoView hg19]  KRTAP10-4 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIKRTAP10-4 [Mapview hg19]  KRTAP10-4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB076351 AJ566382 BC125048 BC125049
RefSeq transcript (Entrez)NM_198687
RefSeq genomic (Entrez)NC_000021 NC_018932 NG_033806 NT_011512 NW_004929427
Consensus coding sequences : CCDS (NCBI)KRTAP10-4
Cluster EST : UnigeneHs.567901 [ NCBI ]
CGAP (NCI)Hs.567901
Alternative Splicing GalleryENSG00000215454
Gene ExpressionKRTAP10-4 [ NCBI-GEO ]   KRTAP10-4 [ EBI - ARRAY_EXPRESS ]   KRTAP10-4 [ SEEK ]   KRTAP10-4 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP10-4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)386672
GTEX Portal (Tissue expression)KRTAP10-4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60372   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60372  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60372
Splice isoforms : SwissVarP60372
PhosPhoSitePlusP60372
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP10-4
DMDM Disease mutations386672
Blocks (Seattle)KRTAP10-4
SuperfamilyP60372
Human Protein AtlasENSG00000215454
Peptide AtlasP60372
HPRD11190
IPIIPI00394669   IPI00937788   
Protein Interaction databases
DIP (DOE-UCLA)P60372
IntAct (EBI)P60372
FunCoupENSG00000215454
BioGRIDKRTAP10-4
STRING (EMBL)KRTAP10-4
ZODIACKRTAP10-4
Ontologies - Pathways
QuickGOP60372
Ontology : AmiGOprotein binding  keratin filament  
Ontology : EGO-EBIprotein binding  keratin filament  
NDEx NetworkKRTAP10-4
Atlas of Cancer Signalling NetworkKRTAP10-4
Wikipedia pathwaysKRTAP10-4
Orthology - Evolution
OrthoDB386672
GeneTree (enSembl)ENSG00000215454
Phylogenetic Trees/Animal Genes : TreeFamKRTAP10-4
HOVERGENP60372
HOGENOMP60372
Homologs : HomoloGeneKRTAP10-4
Homology/Alignments : Family Browser (UCSC)KRTAP10-4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP10-4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP10-4
dbVarKRTAP10-4
ClinVarKRTAP10-4
1000_GenomesKRTAP10-4 
Exome Variant ServerKRTAP10-4
ExAC (Exome Aggregation Consortium)KRTAP10-4 (select the gene name)
Genetic variants : HAPMAP386672
Genomic Variants (DGV)KRTAP10-4 [DGVbeta]
DECIPHER (Syndromes)21:45993606-45995248  ENSG00000215454
CONAN: Copy Number AnalysisKRTAP10-4 
Mutations
ICGC Data PortalKRTAP10-4 
TCGA Data PortalKRTAP10-4 
Broad Tumor PortalKRTAP10-4
OASIS PortalKRTAP10-4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP10-4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP10-4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP10-4
DgiDB (Drug Gene Interaction Database)KRTAP10-4
DoCM (Curated mutations)KRTAP10-4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP10-4 (select a term)
intoGenKRTAP10-4
Cancer3DKRTAP10-4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP10-4
Genetic Testing Registry KRTAP10-4
NextProtP60372 [Medical]
TSGene386672
GENETestsKRTAP10-4
Huge Navigator KRTAP10-4 [HugePedia]
snp3D : Map Gene to Disease386672
BioCentury BCIQKRTAP10-4
ClinGenKRTAP10-4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD386672
Chemical/Pharm GKB GenePA134942730
Clinical trialKRTAP10-4
Miscellaneous
canSAR (ICR)KRTAP10-4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP10-4
EVEXKRTAP10-4
GoPubMedKRTAP10-4
iHOPKRTAP10-4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:10:20 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.