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KRTAP10-6 (keratin associated protein 10-6)

Identity

Alias_namesKRTAP18-6
keratin associated protein 18-6
Alias_symbol (synonym)KRTAP18.6
KAP18.6
KAP10.6
Other alias
HGNC (Hugo) KRTAP10-6
LocusID (NCBI) 386674
Atlas_Id 65058
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 44591268 and ends at 44592505 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP10-6   20523
Cards
Entrez_Gene (NCBI)KRTAP10-6  386674  keratin associated protein 10-6
AliasesKAP10.6; KAP18.6; KRTAP18-6; KRTAP18.6
GeneCards (Weizmann)KRTAP10-6
Ensembl hg19 (Hinxton)ENSG00000188155 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188155 [Gene_View]  chr21:44591268-44592505 [Contig_View]  KRTAP10-6 [Vega]
ICGC DataPortalENSG00000188155
TCGA cBioPortalKRTAP10-6
AceView (NCBI)KRTAP10-6
Genatlas (Paris)KRTAP10-6
WikiGenes386674
SOURCE (Princeton)KRTAP10-6
Genetics Home Reference (NIH)KRTAP10-6
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP10-6  -     chr21:44591268-44592505 -  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP10-6  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblKRTAP10-6 - 21q22.3 [CytoView hg19]  KRTAP10-6 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIKRTAP10-6 [Mapview hg19]  KRTAP10-6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB076353 BC140725 BC160131
RefSeq transcript (Entrez)NM_198688
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP10-6
Cluster EST : UnigeneHs.689666 [ NCBI ]
CGAP (NCI)Hs.689666
Alternative Splicing GalleryENSG00000188155
Gene ExpressionKRTAP10-6 [ NCBI-GEO ]   KRTAP10-6 [ EBI - ARRAY_EXPRESS ]   KRTAP10-6 [ SEEK ]   KRTAP10-6 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP10-6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)386674
GTEX Portal (Tissue expression)KRTAP10-6
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60371   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60371  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60371
Splice isoforms : SwissVarP60371
PhosPhoSitePlusP60371
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP10-6
DMDM Disease mutations386674
Blocks (Seattle)KRTAP10-6
SuperfamilyP60371
Human Protein AtlasENSG00000188155
Peptide AtlasP60371
HPRD11192
IPIIPI00394670   
Protein Interaction databases
DIP (DOE-UCLA)P60371
IntAct (EBI)P60371
FunCoupENSG00000188155
BioGRIDKRTAP10-6
STRING (EMBL)KRTAP10-6
ZODIACKRTAP10-6
Ontologies - Pathways
QuickGOP60371
Ontology : AmiGOcytosol  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  keratinization  keratin filament  
NDEx NetworkKRTAP10-6
Atlas of Cancer Signalling NetworkKRTAP10-6
Wikipedia pathwaysKRTAP10-6
Orthology - Evolution
OrthoDB386674
GeneTree (enSembl)ENSG00000188155
Phylogenetic Trees/Animal Genes : TreeFamKRTAP10-6
HOVERGENP60371
HOGENOMP60371
Homologs : HomoloGeneKRTAP10-6
Homology/Alignments : Family Browser (UCSC)KRTAP10-6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP10-6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP10-6
dbVarKRTAP10-6
ClinVarKRTAP10-6
1000_GenomesKRTAP10-6 
Exome Variant ServerKRTAP10-6
ExAC (Exome Aggregation Consortium)KRTAP10-6 (select the gene name)
Genetic variants : HAPMAP386674
Genomic Variants (DGV)KRTAP10-6 [DGVbeta]
DECIPHERKRTAP10-6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP10-6 
Mutations
ICGC Data PortalKRTAP10-6 
TCGA Data PortalKRTAP10-6 
Broad Tumor PortalKRTAP10-6
OASIS PortalKRTAP10-6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP10-6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP10-6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP10-6
DgiDB (Drug Gene Interaction Database)KRTAP10-6
DoCM (Curated mutations)KRTAP10-6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP10-6 (select a term)
intoGenKRTAP10-6
Cancer3DKRTAP10-6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP10-6
Genetic Testing Registry KRTAP10-6
NextProtP60371 [Medical]
TSGene386674
GENETestsKRTAP10-6
Target ValidationKRTAP10-6
Huge Navigator KRTAP10-6 [HugePedia]
snp3D : Map Gene to Disease386674
BioCentury BCIQKRTAP10-6
ClinGenKRTAP10-6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD386674
Chemical/Pharm GKB GenePA134871340
Clinical trialKRTAP10-6
Miscellaneous
canSAR (ICR)KRTAP10-6 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP10-6
EVEXKRTAP10-6
GoPubMedKRTAP10-6
iHOPKRTAP10-6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:07 CEST 2017

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