Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KRTAP10-7 (keratin associated protein 10-7)

Identity

Alias_namesKRTAP18-7
Alias_symbol (synonym)KAP10.7
KAP18.7
Other alias
HGNC (Hugo) KRTAP10-7
LocusID (NCBI) 386675
Atlas_Id 65059
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 44600597 and ends at 44602174 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP10-7   22970
Cards
Entrez_Gene (NCBI)KRTAP10-7  386675  keratin associated protein 10-7
AliasesKAP10.7; KAP18.7; KRTAP18-7
GeneCards (Weizmann)KRTAP10-7
Ensembl hg19 (Hinxton)ENSG00000272804 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000272804 [Gene_View]  chr21:44600597-44602174 [Contig_View]  KRTAP10-7 [Vega]
ICGC DataPortalENSG00000272804
TCGA cBioPortalKRTAP10-7
AceView (NCBI)KRTAP10-7
Genatlas (Paris)KRTAP10-7
WikiGenes386675
SOURCE (Princeton)KRTAP10-7
Genetics Home Reference (NIH)KRTAP10-7
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP10-7  -     chr21:44600597-44602174 +  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP10-7  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblKRTAP10-7 - 21q22.3 [CytoView hg19]  KRTAP10-7 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIKRTAP10-7 [Mapview hg19]  KRTAP10-7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB076354 AJ566385 BC119643
RefSeq transcript (Entrez)NM_198689
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP10-7
Cluster EST : UnigeneHs.473999 [ NCBI ]
CGAP (NCI)Hs.473999
Alternative Splicing GalleryENSG00000272804
Gene ExpressionKRTAP10-7 [ NCBI-GEO ]   KRTAP10-7 [ EBI - ARRAY_EXPRESS ]   KRTAP10-7 [ SEEK ]   KRTAP10-7 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP10-7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)386675
GTEX Portal (Tissue expression)KRTAP10-7
Human Protein AtlasENSG00000272804-KRTAP10-7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60409   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60409  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60409
Splice isoforms : SwissVarP60409
PhosPhoSitePlusP60409
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP10-7
DMDM Disease mutations386675
Blocks (Seattle)KRTAP10-7
SuperfamilyP60409
Human Protein Atlas [tissue]ENSG00000272804-KRTAP10-7 [tissue]
Peptide AtlasP60409
HPRD11193
IPIIPI00394671   IPI00793984   
Protein Interaction databases
DIP (DOE-UCLA)P60409
IntAct (EBI)P60409
FunCoupENSG00000272804
BioGRIDKRTAP10-7
STRING (EMBL)KRTAP10-7
ZODIACKRTAP10-7
Ontologies - Pathways
QuickGOP60409
Ontology : AmiGOprotein binding  cytosol  keratinization  identical protein binding  keratin filament  
Ontology : EGO-EBIprotein binding  cytosol  keratinization  identical protein binding  keratin filament  
NDEx NetworkKRTAP10-7
Atlas of Cancer Signalling NetworkKRTAP10-7
Wikipedia pathwaysKRTAP10-7
Orthology - Evolution
OrthoDB386675
GeneTree (enSembl)ENSG00000272804
Phylogenetic Trees/Animal Genes : TreeFamKRTAP10-7
HOVERGENP60409
HOGENOMP60409
Homologs : HomoloGeneKRTAP10-7
Homology/Alignments : Family Browser (UCSC)KRTAP10-7
Gene fusions - Rearrangements
Fusion: Tumor Portal KRTAP10-7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP10-7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP10-7
dbVarKRTAP10-7
ClinVarKRTAP10-7
1000_GenomesKRTAP10-7 
Exome Variant ServerKRTAP10-7
ExAC (Exome Aggregation Consortium)ENSG00000272804
GNOMAD BrowserENSG00000272804
Genetic variants : HAPMAP386675
Genomic Variants (DGV)KRTAP10-7 [DGVbeta]
DECIPHERKRTAP10-7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP10-7 
Mutations
ICGC Data PortalKRTAP10-7 
TCGA Data PortalKRTAP10-7 
Broad Tumor PortalKRTAP10-7
OASIS PortalKRTAP10-7 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDKRTAP10-7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP10-7
DgiDB (Drug Gene Interaction Database)KRTAP10-7
DoCM (Curated mutations)KRTAP10-7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP10-7 (select a term)
intoGenKRTAP10-7
Cancer3DKRTAP10-7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP10-7
Genetic Testing Registry KRTAP10-7
NextProtP60409 [Medical]
TSGene386675
GENETestsKRTAP10-7
Target ValidationKRTAP10-7
Huge Navigator KRTAP10-7 [HugePedia]
snp3D : Map Gene to Disease386675
BioCentury BCIQKRTAP10-7
ClinGenKRTAP10-7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD386675
Chemical/Pharm GKB GenePA134976547
Clinical trialKRTAP10-7
Miscellaneous
canSAR (ICR)KRTAP10-7 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP10-7
EVEXKRTAP10-7
GoPubMedKRTAP10-7
iHOPKRTAP10-7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:52:59 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.