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KRTAP10-9 (keratin associated protein 10-9)

Identity

Alias_namesKRTAP18-9
Alias_symbol (synonym)KAP10.9
KAP18.9
Other alias
HGNC (Hugo) KRTAP10-9
LocusID (NCBI) 386676
Atlas_Id 65061
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 44627123 and ends at 44628378 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP10-9   22971
Cards
Entrez_Gene (NCBI)KRTAP10-9  386676  keratin associated protein 10-9
AliasesKAP10.9; KAP18.9; KRTAP18-9
GeneCards (Weizmann)KRTAP10-9
Ensembl hg19 (Hinxton)ENSG00000221837 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221837 [Gene_View]  chr21:44627123-44628378 [Contig_View]  KRTAP10-9 [Vega]
ICGC DataPortalENSG00000221837
TCGA cBioPortalKRTAP10-9
AceView (NCBI)KRTAP10-9
Genatlas (Paris)KRTAP10-9
WikiGenes386676
SOURCE (Princeton)KRTAP10-9
Genetics Home Reference (NIH)KRTAP10-9
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP10-9  -     chr21:44627123-44628378 +  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP10-9  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblKRTAP10-9 - 21q22.3 [CytoView hg19]  KRTAP10-9 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIKRTAP10-9 [Mapview hg19]  KRTAP10-9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB076356 AB076357 AJ566386 BC131613
RefSeq transcript (Entrez)NM_198690
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP10-9
Cluster EST : UnigeneHs.474000 [ NCBI ]
CGAP (NCI)Hs.474000
Alternative Splicing GalleryENSG00000221837
Gene ExpressionKRTAP10-9 [ NCBI-GEO ]   KRTAP10-9 [ EBI - ARRAY_EXPRESS ]   KRTAP10-9 [ SEEK ]   KRTAP10-9 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP10-9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)386676
GTEX Portal (Tissue expression)KRTAP10-9
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60411   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60411  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60411
Splice isoforms : SwissVarP60411
PhosPhoSitePlusP60411
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP10-9
DMDM Disease mutations386676
Blocks (Seattle)KRTAP10-9
SuperfamilyP60411
Human Protein AtlasENSG00000221837
Peptide AtlasP60411
HPRD11195
IPIIPI00429312   IPI00448940   
Protein Interaction databases
DIP (DOE-UCLA)P60411
IntAct (EBI)P60411
FunCoupENSG00000221837
BioGRIDKRTAP10-9
STRING (EMBL)KRTAP10-9
ZODIACKRTAP10-9
Ontologies - Pathways
QuickGOP60411
Ontology : AmiGOprotein binding  cytosol  keratinization  keratin filament  
Ontology : EGO-EBIprotein binding  cytosol  keratinization  keratin filament  
NDEx NetworkKRTAP10-9
Atlas of Cancer Signalling NetworkKRTAP10-9
Wikipedia pathwaysKRTAP10-9
Orthology - Evolution
OrthoDB386676
GeneTree (enSembl)ENSG00000221837
Phylogenetic Trees/Animal Genes : TreeFamKRTAP10-9
HOVERGENP60411
HOGENOMP60411
Homologs : HomoloGeneKRTAP10-9
Homology/Alignments : Family Browser (UCSC)KRTAP10-9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP10-9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP10-9
dbVarKRTAP10-9
ClinVarKRTAP10-9
1000_GenomesKRTAP10-9 
Exome Variant ServerKRTAP10-9
ExAC (Exome Aggregation Consortium)KRTAP10-9 (select the gene name)
Genetic variants : HAPMAP386676
Genomic Variants (DGV)KRTAP10-9 [DGVbeta]
DECIPHERKRTAP10-9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP10-9 
Mutations
ICGC Data PortalKRTAP10-9 
TCGA Data PortalKRTAP10-9 
Broad Tumor PortalKRTAP10-9
OASIS PortalKRTAP10-9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP10-9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP10-9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP10-9
DgiDB (Drug Gene Interaction Database)KRTAP10-9
DoCM (Curated mutations)KRTAP10-9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP10-9 (select a term)
intoGenKRTAP10-9
Cancer3DKRTAP10-9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP10-9
Genetic Testing Registry KRTAP10-9
NextProtP60411 [Medical]
TSGene386676
GENETestsKRTAP10-9
Target ValidationKRTAP10-9
Huge Navigator KRTAP10-9 [HugePedia]
snp3D : Map Gene to Disease386676
BioCentury BCIQKRTAP10-9
ClinGenKRTAP10-9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD386676
Chemical/Pharm GKB GenePA134991131
Clinical trialKRTAP10-9
Miscellaneous
canSAR (ICR)KRTAP10-9 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP10-9
EVEXKRTAP10-9
GoPubMedKRTAP10-9
iHOPKRTAP10-9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:07 CEST 2017

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