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KRTAP12-1 (keratin associated protein 12-1)

Identity

Alias_symbol (synonym)KRTAP12.1
KAP12.1
Other alias
HGNC (Hugo) KRTAP12-1
LocusID (NCBI) 353332
Atlas_Id 65064
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 44681576 and ends at 44682163 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP12-1   20529
Cards
Entrez_Gene (NCBI)KRTAP12-1  353332  keratin associated protein 12-1
AliasesKAP12.1; KRTAP12.1
GeneCards (Weizmann)KRTAP12-1
Ensembl hg19 (Hinxton)ENSG00000187175 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187175 [Gene_View]  chr21:44681576-44682163 [Contig_View]  KRTAP12-1 [Vega]
ICGC DataPortalENSG00000187175
TCGA cBioPortalKRTAP12-1
AceView (NCBI)KRTAP12-1
Genatlas (Paris)KRTAP12-1
WikiGenes353332
SOURCE (Princeton)KRTAP12-1
Genetics Home Reference (NIH)KRTAP12-1
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP12-1  -     chr21:44681576-44682163 -  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP12-1  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblKRTAP12-1 - 21q22.3 [CytoView hg19]  KRTAP12-1 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIKRTAP12-1 [Mapview hg19]  KRTAP12-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB076363 AJ566388 BC119713 BC120942 BC127648
RefSeq transcript (Entrez)NM_181686
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP12-1
Cluster EST : UnigeneHs.688628 [ NCBI ]
CGAP (NCI)Hs.688628
Alternative Splicing GalleryENSG00000187175
Gene ExpressionKRTAP12-1 [ NCBI-GEO ]   KRTAP12-1 [ EBI - ARRAY_EXPRESS ]   KRTAP12-1 [ SEEK ]   KRTAP12-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP12-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353332
GTEX Portal (Tissue expression)KRTAP12-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59990   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59990  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59990
Splice isoforms : SwissVarP59990
PhosPhoSitePlusP59990
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP12-1
DMDM Disease mutations353332
Blocks (Seattle)KRTAP12-1
SuperfamilyP59990
Human Protein AtlasENSG00000187175
Peptide AtlasP59990
HPRD11197
IPIIPI00375324   
Protein Interaction databases
DIP (DOE-UCLA)P59990
IntAct (EBI)P59990
FunCoupENSG00000187175
BioGRIDKRTAP12-1
STRING (EMBL)KRTAP12-1
ZODIACKRTAP12-1
Ontologies - Pathways
QuickGOP59990
Ontology : AmiGOprotein binding  cytosol  keratinization  keratin filament  
Ontology : EGO-EBIprotein binding  cytosol  keratinization  keratin filament  
NDEx NetworkKRTAP12-1
Atlas of Cancer Signalling NetworkKRTAP12-1
Wikipedia pathwaysKRTAP12-1
Orthology - Evolution
OrthoDB353332
GeneTree (enSembl)ENSG00000187175
Phylogenetic Trees/Animal Genes : TreeFamKRTAP12-1
HOVERGENP59990
HOGENOMP59990
Homologs : HomoloGeneKRTAP12-1
Homology/Alignments : Family Browser (UCSC)KRTAP12-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP12-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP12-1
dbVarKRTAP12-1
ClinVarKRTAP12-1
1000_GenomesKRTAP12-1 
Exome Variant ServerKRTAP12-1
ExAC (Exome Aggregation Consortium)KRTAP12-1 (select the gene name)
Genetic variants : HAPMAP353332
Genomic Variants (DGV)KRTAP12-1 [DGVbeta]
DECIPHERKRTAP12-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP12-1 
Mutations
ICGC Data PortalKRTAP12-1 
TCGA Data PortalKRTAP12-1 
Broad Tumor PortalKRTAP12-1
OASIS PortalKRTAP12-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP12-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP12-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP12-1
DgiDB (Drug Gene Interaction Database)KRTAP12-1
DoCM (Curated mutations)KRTAP12-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP12-1 (select a term)
intoGenKRTAP12-1
Cancer3DKRTAP12-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP12-1
Genetic Testing Registry KRTAP12-1
NextProtP59990 [Medical]
TSGene353332
GENETestsKRTAP12-1
Target ValidationKRTAP12-1
Huge Navigator KRTAP12-1 [HugePedia]
snp3D : Map Gene to Disease353332
BioCentury BCIQKRTAP12-1
ClinGenKRTAP12-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353332
Chemical/Pharm GKB GenePA134971238
Clinical trialKRTAP12-1
Miscellaneous
canSAR (ICR)KRTAP12-1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP12-1
EVEXKRTAP12-1
GoPubMedKRTAP12-1
iHOPKRTAP12-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:15 CEST 2017

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