Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KRTAP12-2 (keratin associated protein 12-2)

Identity

Alias_symbol (synonym)KRTAP12.2
KAP12.2
Other alias
HGNC (Hugo) KRTAP12-2
LocusID (NCBI) 353323
Atlas_Id 65065
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 44666189 and ends at 44666927 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP12-2   20530
Cards
Entrez_Gene (NCBI)KRTAP12-2  353323  keratin associated protein 12-2
AliasesKAP12.2; KRTAP12.2
GeneCards (Weizmann)KRTAP12-2
Ensembl hg19 (Hinxton)ENSG00000221864 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221864 [Gene_View]  chr21:44666189-44666927 [Contig_View]  KRTAP12-2 [Vega]
ICGC DataPortalENSG00000221864
TCGA cBioPortalKRTAP12-2
AceView (NCBI)KRTAP12-2
Genatlas (Paris)KRTAP12-2
WikiGenes353323
SOURCE (Princeton)KRTAP12-2
Genetics Home Reference (NIH)KRTAP12-2
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP12-2  -     chr21:44666189-44666927 -  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP12-2  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblKRTAP12-2 - 21q22.3 [CytoView hg19]  KRTAP12-2 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIKRTAP12-2 [Mapview hg19]  KRTAP12-2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB076362 AJ566389 BC120941
RefSeq transcript (Entrez)NM_181684
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP12-2
Cluster EST : UnigeneHs.567902 [ NCBI ]
CGAP (NCI)Hs.567902
Alternative Splicing GalleryENSG00000221864
Gene ExpressionKRTAP12-2 [ NCBI-GEO ]   KRTAP12-2 [ EBI - ARRAY_EXPRESS ]   KRTAP12-2 [ SEEK ]   KRTAP12-2 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP12-2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353323
GTEX Portal (Tissue expression)KRTAP12-2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59991   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59991  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59991
Splice isoforms : SwissVarP59991
PhosPhoSitePlusP59991
Domains : Interpro (EBI)KAP    KRTAP_PMG   
Domain families : Pfam (Sanger)PMG (PF05287)   
Domain families : Pfam (NCBI)pfam05287   
Conserved Domain (NCBI)KRTAP12-2
DMDM Disease mutations353323
Blocks (Seattle)KRTAP12-2
SuperfamilyP59991
Human Protein AtlasENSG00000221864
Peptide AtlasP59991
HPRD11198
IPIIPI00375323   IPI01012009   
Protein Interaction databases
DIP (DOE-UCLA)P59991
IntAct (EBI)P59991
FunCoupENSG00000221864
BioGRIDKRTAP12-2
STRING (EMBL)KRTAP12-2
ZODIACKRTAP12-2
Ontologies - Pathways
QuickGOP59991
Ontology : AmiGOprotein binding  cytosol  keratinization  keratin filament  
Ontology : EGO-EBIprotein binding  cytosol  keratinization  keratin filament  
NDEx NetworkKRTAP12-2
Atlas of Cancer Signalling NetworkKRTAP12-2
Wikipedia pathwaysKRTAP12-2
Orthology - Evolution
OrthoDB353323
GeneTree (enSembl)ENSG00000221864
Phylogenetic Trees/Animal Genes : TreeFamKRTAP12-2
HOVERGENP59991
HOGENOMP59991
Homologs : HomoloGeneKRTAP12-2
Homology/Alignments : Family Browser (UCSC)KRTAP12-2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP12-2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP12-2
dbVarKRTAP12-2
ClinVarKRTAP12-2
1000_GenomesKRTAP12-2 
Exome Variant ServerKRTAP12-2
ExAC (Exome Aggregation Consortium)KRTAP12-2 (select the gene name)
Genetic variants : HAPMAP353323
Genomic Variants (DGV)KRTAP12-2 [DGVbeta]
DECIPHERKRTAP12-2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP12-2 
Mutations
ICGC Data PortalKRTAP12-2 
TCGA Data PortalKRTAP12-2 
Broad Tumor PortalKRTAP12-2
OASIS PortalKRTAP12-2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP12-2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP12-2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP12-2
DgiDB (Drug Gene Interaction Database)KRTAP12-2
DoCM (Curated mutations)KRTAP12-2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP12-2 (select a term)
intoGenKRTAP12-2
Cancer3DKRTAP12-2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP12-2
Genetic Testing Registry KRTAP12-2
NextProtP59991 [Medical]
TSGene353323
GENETestsKRTAP12-2
Target ValidationKRTAP12-2
Huge Navigator KRTAP12-2 [HugePedia]
snp3D : Map Gene to Disease353323
BioCentury BCIQKRTAP12-2
ClinGenKRTAP12-2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD353323
Chemical/Pharm GKB GenePA134993440
Clinical trialKRTAP12-2
Miscellaneous
canSAR (ICR)KRTAP12-2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP12-2
EVEXKRTAP12-2
GoPubMedKRTAP12-2
iHOPKRTAP12-2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:12:15 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.