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KRTAP12-3 (keratin associated protein 12-3)

Identity

Alias_symbol (synonym)KRTAP12.3
Other alias
HGNC (Hugo) KRTAP12-3
LocusID (NCBI) 386683
Atlas_Id 65066
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 44657932 and ends at 44658341 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP12-3   20531
Cards
Entrez_Gene (NCBI)KRTAP12-3  386683  keratin associated protein 12-3
AliasesKRTAP12.3
GeneCards (Weizmann)KRTAP12-3
Ensembl hg19 (Hinxton)ENSG00000205439 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205439 [Gene_View]  chr21:44657932-44658341 [Contig_View]  KRTAP12-3 [Vega]
ICGC DataPortalENSG00000205439
TCGA cBioPortalKRTAP12-3
AceView (NCBI)KRTAP12-3
Genatlas (Paris)KRTAP12-3
WikiGenes386683
SOURCE (Princeton)KRTAP12-3
Genetics Home Reference (NIH)KRTAP12-3
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP12-3  -     chr21:44657932-44658341 +  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP12-3  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblKRTAP12-3 - 21q22.3 [CytoView hg19]  KRTAP12-3 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIKRTAP12-3 [Mapview hg19]  KRTAP12-3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB076361 BC160116
RefSeq transcript (Entrez)NM_198697
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP12-3
Cluster EST : UnigeneHs.528023 [ NCBI ]
CGAP (NCI)Hs.528023
Alternative Splicing GalleryENSG00000205439
Gene ExpressionKRTAP12-3 [ NCBI-GEO ]   KRTAP12-3 [ EBI - ARRAY_EXPRESS ]   KRTAP12-3 [ SEEK ]   KRTAP12-3 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP12-3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)386683
GTEX Portal (Tissue expression)KRTAP12-3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60328   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60328  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60328
Splice isoforms : SwissVarP60328
PhosPhoSitePlusP60328
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP12-3
DMDM Disease mutations386683
Blocks (Seattle)KRTAP12-3
SuperfamilyP60328
Human Protein AtlasENSG00000205439
Peptide AtlasP60328
HPRD11199
IPIIPI00394681   IPI01011280   
Protein Interaction databases
DIP (DOE-UCLA)P60328
IntAct (EBI)P60328
FunCoupENSG00000205439
BioGRIDKRTAP12-3
STRING (EMBL)KRTAP12-3
ZODIACKRTAP12-3
Ontologies - Pathways
QuickGOP60328
Ontology : AmiGOcytosol  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  keratinization  keratin filament  
NDEx NetworkKRTAP12-3
Atlas of Cancer Signalling NetworkKRTAP12-3
Wikipedia pathwaysKRTAP12-3
Orthology - Evolution
OrthoDB386683
GeneTree (enSembl)ENSG00000205439
Phylogenetic Trees/Animal Genes : TreeFamKRTAP12-3
HOVERGENP60328
HOGENOMP60328
Homologs : HomoloGeneKRTAP12-3
Homology/Alignments : Family Browser (UCSC)KRTAP12-3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP12-3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP12-3
dbVarKRTAP12-3
ClinVarKRTAP12-3
1000_GenomesKRTAP12-3 
Exome Variant ServerKRTAP12-3
ExAC (Exome Aggregation Consortium)KRTAP12-3 (select the gene name)
Genetic variants : HAPMAP386683
Genomic Variants (DGV)KRTAP12-3 [DGVbeta]
DECIPHERKRTAP12-3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP12-3 
Mutations
ICGC Data PortalKRTAP12-3 
TCGA Data PortalKRTAP12-3 
Broad Tumor PortalKRTAP12-3
OASIS PortalKRTAP12-3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP12-3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP12-3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP12-3
DgiDB (Drug Gene Interaction Database)KRTAP12-3
DoCM (Curated mutations)KRTAP12-3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP12-3 (select a term)
intoGenKRTAP12-3
Cancer3DKRTAP12-3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP12-3
Genetic Testing Registry KRTAP12-3
NextProtP60328 [Medical]
TSGene386683
GENETestsKRTAP12-3
Target ValidationKRTAP12-3
Huge Navigator KRTAP12-3 [HugePedia]
snp3D : Map Gene to Disease386683
BioCentury BCIQKRTAP12-3
ClinGenKRTAP12-3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD386683
Chemical/Pharm GKB GenePA134986807
Clinical trialKRTAP12-3
Miscellaneous
canSAR (ICR)KRTAP12-3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP12-3
EVEXKRTAP12-3
GoPubMedKRTAP12-3
iHOPKRTAP12-3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:09 CEST 2017

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