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KRTAP12-4 (keratin associated protein 12-4)

Identity

Alias_symbol (synonym)KRTAP12.4
Other alias
HGNC (Hugo) KRTAP12-4
LocusID (NCBI) 386684
Atlas_Id 65067
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 44654213 and ends at 44654659 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP12-4   20532
Cards
Entrez_Gene (NCBI)KRTAP12-4  386684  keratin associated protein 12-4
AliasesKRTAP12.4
GeneCards (Weizmann)KRTAP12-4
Ensembl hg19 (Hinxton)ENSG00000212933 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000212933 [Gene_View]  chr21:44654213-44654659 [Contig_View]  KRTAP12-4 [Vega]
ICGC DataPortalENSG00000212933
TCGA cBioPortalKRTAP12-4
AceView (NCBI)KRTAP12-4
Genatlas (Paris)KRTAP12-4
WikiGenes386684
SOURCE (Princeton)KRTAP12-4
Genetics Home Reference (NIH)KRTAP12-4
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP12-4  -     chr21:44654213-44654659 -  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP12-4  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblKRTAP12-4 - 21q22.3 [CytoView hg19]  KRTAP12-4 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIKRTAP12-4 [Mapview hg19]  KRTAP12-4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB076360 BC125198
RefSeq transcript (Entrez)NM_198698
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP12-4
Cluster EST : UnigeneHs.689664 [ NCBI ]
CGAP (NCI)Hs.689664
Alternative Splicing GalleryENSG00000212933
Gene ExpressionKRTAP12-4 [ NCBI-GEO ]   KRTAP12-4 [ EBI - ARRAY_EXPRESS ]   KRTAP12-4 [ SEEK ]   KRTAP12-4 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP12-4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)386684
GTEX Portal (Tissue expression)KRTAP12-4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP60329   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP60329  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP60329
Splice isoforms : SwissVarP60329
PhosPhoSitePlusP60329
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KRTAP12-4
DMDM Disease mutations386684
Blocks (Seattle)KRTAP12-4
SuperfamilyP60329
Human Protein AtlasENSG00000212933
Peptide AtlasP60329
HPRD11200
IPIIPI00394682   
Protein Interaction databases
DIP (DOE-UCLA)P60329
IntAct (EBI)P60329
FunCoupENSG00000212933
BioGRIDKRTAP12-4
STRING (EMBL)KRTAP12-4
ZODIACKRTAP12-4
Ontologies - Pathways
QuickGOP60329
Ontology : AmiGOprotein binding  cytosol  keratinization  keratin filament  
Ontology : EGO-EBIprotein binding  cytosol  keratinization  keratin filament  
NDEx NetworkKRTAP12-4
Atlas of Cancer Signalling NetworkKRTAP12-4
Wikipedia pathwaysKRTAP12-4
Orthology - Evolution
OrthoDB386684
GeneTree (enSembl)ENSG00000212933
Phylogenetic Trees/Animal Genes : TreeFamKRTAP12-4
HOVERGENP60329
HOGENOMP60329
Homologs : HomoloGeneKRTAP12-4
Homology/Alignments : Family Browser (UCSC)KRTAP12-4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP12-4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP12-4
dbVarKRTAP12-4
ClinVarKRTAP12-4
1000_GenomesKRTAP12-4 
Exome Variant ServerKRTAP12-4
ExAC (Exome Aggregation Consortium)KRTAP12-4 (select the gene name)
Genetic variants : HAPMAP386684
Genomic Variants (DGV)KRTAP12-4 [DGVbeta]
DECIPHERKRTAP12-4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP12-4 
Mutations
ICGC Data PortalKRTAP12-4 
TCGA Data PortalKRTAP12-4 
Broad Tumor PortalKRTAP12-4
OASIS PortalKRTAP12-4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP12-4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP12-4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP12-4
DgiDB (Drug Gene Interaction Database)KRTAP12-4
DoCM (Curated mutations)KRTAP12-4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP12-4 (select a term)
intoGenKRTAP12-4
Cancer3DKRTAP12-4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP12-4
Genetic Testing Registry KRTAP12-4
NextProtP60329 [Medical]
TSGene386684
GENETestsKRTAP12-4
Target ValidationKRTAP12-4
Huge Navigator KRTAP12-4 [HugePedia]
snp3D : Map Gene to Disease386684
BioCentury BCIQKRTAP12-4
ClinGenKRTAP12-4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD386684
Chemical/Pharm GKB GenePA134932676
Clinical trialKRTAP12-4
Miscellaneous
canSAR (ICR)KRTAP12-4 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP12-4
EVEXKRTAP12-4
GoPubMedKRTAP12-4
iHOPKRTAP12-4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:09 CEST 2017

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