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KRTAP13-1 (keratin associated protein 13-1)

Identity

Alias_symbol (synonym)KAP13.1
Other aliasKRTAP13.1
HGNC (Hugo) KRTAP13-1
LocusID (NCBI) 140258
Atlas_Id 65069
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30396074 and ends at 30396820 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP13-1   18924
Cards
Entrez_Gene (NCBI)KRTAP13-1  140258  keratin associated protein 13-1
AliasesKAP13.1; KRTAP13.1
GeneCards (Weizmann)KRTAP13-1
Ensembl hg19 (Hinxton)ENSG00000198390 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198390 [Gene_View]  chr21:30396074-30396820 [Contig_View]  KRTAP13-1 [Vega]
ICGC DataPortalENSG00000198390
TCGA cBioPortalKRTAP13-1
AceView (NCBI)KRTAP13-1
Genatlas (Paris)KRTAP13-1
WikiGenes140258
SOURCE (Princeton)KRTAP13-1
Genetics Home Reference (NIH)KRTAP13-1
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP13-1  -     chr21:30396074-30396820 +  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP13-1  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP13-1 - 21q22.11 [CytoView hg19]  KRTAP13-1 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP13-1 [Mapview hg19]  KRTAP13-1 [Mapview hg38]
OMIM608718   
Gene and transcription
Genbank (Entrez)AB096939 AJ457066 BC113536 BC113538
RefSeq transcript (Entrez)NM_181599
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP13-1
Cluster EST : UnigeneHs.407653 [ NCBI ]
CGAP (NCI)Hs.407653
Alternative Splicing GalleryENSG00000198390
Gene ExpressionKRTAP13-1 [ NCBI-GEO ]   KRTAP13-1 [ EBI - ARRAY_EXPRESS ]   KRTAP13-1 [ SEEK ]   KRTAP13-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP13-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140258
GTEX Portal (Tissue expression)KRTAP13-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUC0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUC0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUC0
Splice isoforms : SwissVarQ8IUC0
PhosPhoSitePlusQ8IUC0
Domains : Interpro (EBI)KRTAP_PMG   
Domain families : Pfam (Sanger)PMG (PF05287)   
Domain families : Pfam (NCBI)pfam05287   
Conserved Domain (NCBI)KRTAP13-1
DMDM Disease mutations140258
Blocks (Seattle)KRTAP13-1
SuperfamilyQ8IUC0
Human Protein AtlasENSG00000198390
Peptide AtlasQ8IUC0
HPRD10570
IPIIPI00873891   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUC0
IntAct (EBI)Q8IUC0
FunCoupENSG00000198390
BioGRIDKRTAP13-1
STRING (EMBL)KRTAP13-1
ZODIACKRTAP13-1
Ontologies - Pathways
QuickGOQ8IUC0
Ontology : AmiGOcytosol  intermediate filament  keratinization  
Ontology : EGO-EBIcytosol  intermediate filament  keratinization  
NDEx NetworkKRTAP13-1
Atlas of Cancer Signalling NetworkKRTAP13-1
Wikipedia pathwaysKRTAP13-1
Orthology - Evolution
OrthoDB140258
GeneTree (enSembl)ENSG00000198390
Phylogenetic Trees/Animal Genes : TreeFamKRTAP13-1
HOVERGENQ8IUC0
HOGENOMQ8IUC0
Homologs : HomoloGeneKRTAP13-1
Homology/Alignments : Family Browser (UCSC)KRTAP13-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP13-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP13-1
dbVarKRTAP13-1
ClinVarKRTAP13-1
1000_GenomesKRTAP13-1 
Exome Variant ServerKRTAP13-1
ExAC (Exome Aggregation Consortium)KRTAP13-1 (select the gene name)
Genetic variants : HAPMAP140258
Genomic Variants (DGV)KRTAP13-1 [DGVbeta]
DECIPHERKRTAP13-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP13-1 
Mutations
ICGC Data PortalKRTAP13-1 
TCGA Data PortalKRTAP13-1 
Broad Tumor PortalKRTAP13-1
OASIS PortalKRTAP13-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP13-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP13-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP13-1
DgiDB (Drug Gene Interaction Database)KRTAP13-1
DoCM (Curated mutations)KRTAP13-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP13-1 (select a term)
intoGenKRTAP13-1
Cancer3DKRTAP13-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608718   
Orphanet
MedgenKRTAP13-1
Genetic Testing Registry KRTAP13-1
NextProtQ8IUC0 [Medical]
TSGene140258
GENETestsKRTAP13-1
Target ValidationKRTAP13-1
Huge Navigator KRTAP13-1 [HugePedia]
snp3D : Map Gene to Disease140258
BioCentury BCIQKRTAP13-1
ClinGenKRTAP13-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140258
Chemical/Pharm GKB GenePA134987916
Clinical trialKRTAP13-1
Miscellaneous
canSAR (ICR)KRTAP13-1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP13-1
EVEXKRTAP13-1
GoPubMedKRTAP13-1
iHOPKRTAP13-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:15 CEST 2017

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