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KRTAP13-2 (keratin associated protein 13-2)

Identity

Alias_symbol (synonym)KAP13-2
Other alias
HGNC (Hugo) KRTAP13-2
LocusID (NCBI) 337959
Atlas_Id 65070
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30371391 and ends at 30372239 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP13-2   18923
Cards
Entrez_Gene (NCBI)KRTAP13-2  337959  keratin associated protein 13-2
AliasesKAP13-2
GeneCards (Weizmann)KRTAP13-2
Ensembl hg19 (Hinxton)ENSG00000182816 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182816 [Gene_View]  chr21:30371391-30372239 [Contig_View]  KRTAP13-2 [Vega]
ICGC DataPortalENSG00000182816
TCGA cBioPortalKRTAP13-2
AceView (NCBI)KRTAP13-2
Genatlas (Paris)KRTAP13-2
WikiGenes337959
SOURCE (Princeton)KRTAP13-2
Genetics Home Reference (NIH)KRTAP13-2
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP13-2  -     chr21:30371391-30372239 -  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP13-2  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP13-2 - 21q22.11 [CytoView hg19]  KRTAP13-2 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP13-2 [Mapview hg19]  KRTAP13-2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096938 BC093934 BC093936 BX104478 W72002
RefSeq transcript (Entrez)NM_181621
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP13-2
Cluster EST : UnigeneHs.58152 [ NCBI ]
CGAP (NCI)Hs.58152
Alternative Splicing GalleryENSG00000182816
Gene ExpressionKRTAP13-2 [ NCBI-GEO ]   KRTAP13-2 [ EBI - ARRAY_EXPRESS ]   KRTAP13-2 [ SEEK ]   KRTAP13-2 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP13-2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)337959
GTEX Portal (Tissue expression)KRTAP13-2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ52LG2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ52LG2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ52LG2
Splice isoforms : SwissVarQ52LG2
PhosPhoSitePlusQ52LG2
Domains : Interpro (EBI)KRTAP_PMG   
Domain families : Pfam (Sanger)PMG (PF05287)   
Domain families : Pfam (NCBI)pfam05287   
Conserved Domain (NCBI)KRTAP13-2
DMDM Disease mutations337959
Blocks (Seattle)KRTAP13-2
SuperfamilyQ52LG2
Human Protein AtlasENSG00000182816
Peptide AtlasQ52LG2
HPRD11201
IPIIPI00373959   
Protein Interaction databases
DIP (DOE-UCLA)Q52LG2
IntAct (EBI)Q52LG2
FunCoupENSG00000182816
BioGRIDKRTAP13-2
STRING (EMBL)KRTAP13-2
ZODIACKRTAP13-2
Ontologies - Pathways
QuickGOQ52LG2
Ontology : AmiGOcytosol  intermediate filament  keratinization  
Ontology : EGO-EBIcytosol  intermediate filament  keratinization  
NDEx NetworkKRTAP13-2
Atlas of Cancer Signalling NetworkKRTAP13-2
Wikipedia pathwaysKRTAP13-2
Orthology - Evolution
OrthoDB337959
GeneTree (enSembl)ENSG00000182816
Phylogenetic Trees/Animal Genes : TreeFamKRTAP13-2
HOVERGENQ52LG2
HOGENOMQ52LG2
Homologs : HomoloGeneKRTAP13-2
Homology/Alignments : Family Browser (UCSC)KRTAP13-2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP13-2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP13-2
dbVarKRTAP13-2
ClinVarKRTAP13-2
1000_GenomesKRTAP13-2 
Exome Variant ServerKRTAP13-2
ExAC (Exome Aggregation Consortium)KRTAP13-2 (select the gene name)
Genetic variants : HAPMAP337959
Genomic Variants (DGV)KRTAP13-2 [DGVbeta]
DECIPHERKRTAP13-2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP13-2 
Mutations
ICGC Data PortalKRTAP13-2 
TCGA Data PortalKRTAP13-2 
Broad Tumor PortalKRTAP13-2
OASIS PortalKRTAP13-2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP13-2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP13-2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP13-2
DgiDB (Drug Gene Interaction Database)KRTAP13-2
DoCM (Curated mutations)KRTAP13-2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP13-2 (select a term)
intoGenKRTAP13-2
Cancer3DKRTAP13-2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP13-2
Genetic Testing Registry KRTAP13-2
NextProtQ52LG2 [Medical]
TSGene337959
GENETestsKRTAP13-2
Target ValidationKRTAP13-2
Huge Navigator KRTAP13-2 [HugePedia]
snp3D : Map Gene to Disease337959
BioCentury BCIQKRTAP13-2
ClinGenKRTAP13-2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD337959
Chemical/Pharm GKB GenePA134994193
Clinical trialKRTAP13-2
Miscellaneous
canSAR (ICR)KRTAP13-2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP13-2
EVEXKRTAP13-2
GoPubMedKRTAP13-2
iHOPKRTAP13-2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:09 CEST 2017

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