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KRTAP13-3 (keratin associated protein 13-3)

Identity

Alias_symbol (synonym)KAP13.3
Other alias
HGNC (Hugo) KRTAP13-3
LocusID (NCBI) 337960
Atlas_Id 65071
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30425393 and ends at 30425912 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP13-3   18925
Cards
Entrez_Gene (NCBI)KRTAP13-3  337960  keratin associated protein 13-3
AliasesKAP13.3
GeneCards (Weizmann)KRTAP13-3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:30425393-30425912 [Contig_View]  KRTAP13-3 [Vega]
TCGA cBioPortalKRTAP13-3
AceView (NCBI)KRTAP13-3
Genatlas (Paris)KRTAP13-3
WikiGenes337960
SOURCE (Princeton)KRTAP13-3
Genetics Home Reference (NIH)KRTAP13-3
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP13-3  -     chr21:30425393-30425912 -  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP13-3  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP13-3 - 21q22.11 [CytoView hg19]  KRTAP13-3 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP13-3 [Mapview hg19]  KRTAP13-3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096940 BC103965
RefSeq transcript (Entrez)NM_181622
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP13-3
Cluster EST : UnigeneHs.553687 [ NCBI ]
CGAP (NCI)Hs.553687
Gene ExpressionKRTAP13-3 [ NCBI-GEO ]   KRTAP13-3 [ EBI - ARRAY_EXPRESS ]   KRTAP13-3 [ SEEK ]   KRTAP13-3 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP13-3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)337960
GTEX Portal (Tissue expression)KRTAP13-3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3SY46   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3SY46  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3SY46
Splice isoforms : SwissVarQ3SY46
PhosPhoSitePlusQ3SY46
Domains : Interpro (EBI)KRTAP_PMG   
Domain families : Pfam (Sanger)PMG (PF05287)   
Domain families : Pfam (NCBI)pfam05287   
Conserved Domain (NCBI)KRTAP13-3
DMDM Disease mutations337960
Blocks (Seattle)KRTAP13-3
SuperfamilyQ3SY46
Peptide AtlasQ3SY46
HPRD11202
IPIIPI00373960   IPI00939380   
Protein Interaction databases
DIP (DOE-UCLA)Q3SY46
IntAct (EBI)Q3SY46
BioGRIDKRTAP13-3
STRING (EMBL)KRTAP13-3
ZODIACKRTAP13-3
Ontologies - Pathways
QuickGOQ3SY46
Ontology : AmiGOprotein binding  cytosol  intermediate filament  keratinization  
Ontology : EGO-EBIprotein binding  cytosol  intermediate filament  keratinization  
NDEx NetworkKRTAP13-3
Atlas of Cancer Signalling NetworkKRTAP13-3
Wikipedia pathwaysKRTAP13-3
Orthology - Evolution
OrthoDB337960
Phylogenetic Trees/Animal Genes : TreeFamKRTAP13-3
HOVERGENQ3SY46
HOGENOMQ3SY46
Homologs : HomoloGeneKRTAP13-3
Homology/Alignments : Family Browser (UCSC)KRTAP13-3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP13-3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP13-3
dbVarKRTAP13-3
ClinVarKRTAP13-3
1000_GenomesKRTAP13-3 
Exome Variant ServerKRTAP13-3
ExAC (Exome Aggregation Consortium)KRTAP13-3 (select the gene name)
Genetic variants : HAPMAP337960
Genomic Variants (DGV)KRTAP13-3 [DGVbeta]
DECIPHERKRTAP13-3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP13-3 
Mutations
ICGC Data PortalKRTAP13-3 
TCGA Data PortalKRTAP13-3 
Broad Tumor PortalKRTAP13-3
OASIS PortalKRTAP13-3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP13-3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP13-3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP13-3
DgiDB (Drug Gene Interaction Database)KRTAP13-3
DoCM (Curated mutations)KRTAP13-3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP13-3 (select a term)
intoGenKRTAP13-3
Cancer3DKRTAP13-3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP13-3
Genetic Testing Registry KRTAP13-3
NextProtQ3SY46 [Medical]
TSGene337960
GENETestsKRTAP13-3
Target ValidationKRTAP13-3
Huge Navigator KRTAP13-3 [HugePedia]
snp3D : Map Gene to Disease337960
BioCentury BCIQKRTAP13-3
ClinGenKRTAP13-3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD337960
Chemical/Pharm GKB GenePA134901486
Clinical trialKRTAP13-3
Miscellaneous
canSAR (ICR)KRTAP13-3 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP13-3
EVEXKRTAP13-3
GoPubMedKRTAP13-3
iHOPKRTAP13-3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:16 CEST 2017

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