Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KRTAP13-4 (keratin associated protein 13-4)

Identity

Alias_symbol (synonym)KAP13.4
Other alias
HGNC (Hugo) KRTAP13-4
LocusID (NCBI) 284827
Atlas_Id 65072
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30430276 and ends at 30430758 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP13-4   18926
Cards
Entrez_Gene (NCBI)KRTAP13-4  284827  keratin associated protein 13-4
AliasesKAP13.4
GeneCards (Weizmann)KRTAP13-4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:30430276-30430758 [Contig_View]  KRTAP13-4 [Vega]
TCGA cBioPortalKRTAP13-4
AceView (NCBI)KRTAP13-4
Genatlas (Paris)KRTAP13-4
WikiGenes284827
SOURCE (Princeton)KRTAP13-4
Genetics Home Reference (NIH)KRTAP13-4
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP13-4  -     chr21:30430276-30430758 +  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP13-4  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP13-4 - 21q22.11 [CytoView hg19]  KRTAP13-4 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP13-4 [Mapview hg19]  KRTAP13-4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096941 BC131691
RefSeq transcript (Entrez)NM_181600
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP13-4
Cluster EST : UnigeneHs.553677 [ NCBI ]
CGAP (NCI)Hs.553677
Gene ExpressionKRTAP13-4 [ NCBI-GEO ]   KRTAP13-4 [ EBI - ARRAY_EXPRESS ]   KRTAP13-4 [ SEEK ]   KRTAP13-4 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP13-4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284827
GTEX Portal (Tissue expression)KRTAP13-4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3LI77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3LI77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3LI77
Splice isoforms : SwissVarQ3LI77
PhosPhoSitePlusQ3LI77
Domains : Interpro (EBI)KRTAP_PMG   
Domain families : Pfam (Sanger)PMG (PF05287)   
Domain families : Pfam (NCBI)pfam05287   
Conserved Domain (NCBI)KRTAP13-4
DMDM Disease mutations284827
Blocks (Seattle)KRTAP13-4
SuperfamilyQ3LI77
Peptide AtlasQ3LI77
HPRD11203
IPIIPI00373947   
Protein Interaction databases
DIP (DOE-UCLA)Q3LI77
IntAct (EBI)Q3LI77
BioGRIDKRTAP13-4
STRING (EMBL)KRTAP13-4
ZODIACKRTAP13-4
Ontologies - Pathways
QuickGOQ3LI77
Ontology : AmiGOcytosol  intermediate filament  keratinization  
Ontology : EGO-EBIcytosol  intermediate filament  keratinization  
NDEx NetworkKRTAP13-4
Atlas of Cancer Signalling NetworkKRTAP13-4
Wikipedia pathwaysKRTAP13-4
Orthology - Evolution
OrthoDB284827
Phylogenetic Trees/Animal Genes : TreeFamKRTAP13-4
HOVERGENQ3LI77
HOGENOMQ3LI77
Homologs : HomoloGeneKRTAP13-4
Homology/Alignments : Family Browser (UCSC)KRTAP13-4
Gene fusions - Rearrangements
Tumor Fusion PortalKRTAP13-4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP13-4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP13-4
dbVarKRTAP13-4
ClinVarKRTAP13-4
1000_GenomesKRTAP13-4 
Exome Variant ServerKRTAP13-4
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP284827
Genomic Variants (DGV)KRTAP13-4 [DGVbeta]
DECIPHERKRTAP13-4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP13-4 
Mutations
ICGC Data PortalKRTAP13-4 
TCGA Data PortalKRTAP13-4 
Broad Tumor PortalKRTAP13-4
OASIS PortalKRTAP13-4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP13-4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP13-4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP13-4
DgiDB (Drug Gene Interaction Database)KRTAP13-4
DoCM (Curated mutations)KRTAP13-4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP13-4 (select a term)
intoGenKRTAP13-4
Cancer3DKRTAP13-4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETKRTAP13-4
MedgenKRTAP13-4
Genetic Testing Registry KRTAP13-4
NextProtQ3LI77 [Medical]
TSGene284827
GENETestsKRTAP13-4
Target ValidationKRTAP13-4
Huge Navigator KRTAP13-4 [HugePedia]
snp3D : Map Gene to Disease284827
BioCentury BCIQKRTAP13-4
ClinGenKRTAP13-4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284827
Chemical/Pharm GKB GenePA134861175
Clinical trialKRTAP13-4
Miscellaneous
canSAR (ICR)KRTAP13-4 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP13-4
EVEXKRTAP13-4
GoPubMedKRTAP13-4
iHOPKRTAP13-4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:42:46 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.