Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KRTAP15-1 (keratin associated protein 15-1)

Identity

Alias_symbol (synonym)KAP15.1
Other alias
HGNC (Hugo) KRTAP15-1
LocusID (NCBI) 254950
Atlas_Id 65075
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30440328 and ends at 30440780 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP15-1   18927
Cards
Entrez_Gene (NCBI)KRTAP15-1  254950  keratin associated protein 15-1
AliasesKAP15.1
GeneCards (Weizmann)KRTAP15-1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:30440328-30440780 [Contig_View]  KRTAP15-1 [Vega]
TCGA cBioPortalKRTAP15-1
AceView (NCBI)KRTAP15-1
Genatlas (Paris)KRTAP15-1
WikiGenes254950
SOURCE (Princeton)KRTAP15-1
Genetics Home Reference (NIH)KRTAP15-1
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP15-1  -     chr21:30440328-30440780 +  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP15-1  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP15-1 - 21q22.11 [CytoView hg19]  KRTAP15-1 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP15-1 [Mapview hg19]  KRTAP15-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096942 BC104925 BC104927
RefSeq transcript (Entrez)NM_181623
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP15-1
Cluster EST : UnigeneHs.553654 [ NCBI ]
CGAP (NCI)Hs.553654
Gene ExpressionKRTAP15-1 [ NCBI-GEO ]   KRTAP15-1 [ EBI - ARRAY_EXPRESS ]   KRTAP15-1 [ SEEK ]   KRTAP15-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP15-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254950
GTEX Portal (Tissue expression)KRTAP15-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3LI76   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3LI76  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3LI76
Splice isoforms : SwissVarQ3LI76
PhosPhoSitePlusQ3LI76
Domains : Interpro (EBI)KRTAP_PMG   
Domain families : Pfam (Sanger)PMG (PF05287)   
Domain families : Pfam (NCBI)pfam05287   
Conserved Domain (NCBI)KRTAP15-1
DMDM Disease mutations254950
Blocks (Seattle)KRTAP15-1
SuperfamilyQ3LI76
Peptide AtlasQ3LI76
HPRD11204
IPIIPI00373961   
Protein Interaction databases
DIP (DOE-UCLA)Q3LI76
IntAct (EBI)Q3LI76
BioGRIDKRTAP15-1
STRING (EMBL)KRTAP15-1
ZODIACKRTAP15-1
Ontologies - Pathways
QuickGOQ3LI76
Ontology : AmiGOcytosol  intermediate filament  keratinization  
Ontology : EGO-EBIcytosol  intermediate filament  keratinization  
NDEx NetworkKRTAP15-1
Atlas of Cancer Signalling NetworkKRTAP15-1
Wikipedia pathwaysKRTAP15-1
Orthology - Evolution
OrthoDB254950
Phylogenetic Trees/Animal Genes : TreeFamKRTAP15-1
HOVERGENQ3LI76
HOGENOMQ3LI76
Homologs : HomoloGeneKRTAP15-1
Homology/Alignments : Family Browser (UCSC)KRTAP15-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP15-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP15-1
dbVarKRTAP15-1
ClinVarKRTAP15-1
1000_GenomesKRTAP15-1 
Exome Variant ServerKRTAP15-1
ExAC (Exome Aggregation Consortium)KRTAP15-1 (select the gene name)
Genetic variants : HAPMAP254950
Genomic Variants (DGV)KRTAP15-1 [DGVbeta]
DECIPHERKRTAP15-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP15-1 
Mutations
ICGC Data PortalKRTAP15-1 
TCGA Data PortalKRTAP15-1 
Broad Tumor PortalKRTAP15-1
OASIS PortalKRTAP15-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP15-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP15-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP15-1
DgiDB (Drug Gene Interaction Database)KRTAP15-1
DoCM (Curated mutations)KRTAP15-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP15-1 (select a term)
intoGenKRTAP15-1
Cancer3DKRTAP15-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP15-1
Genetic Testing Registry KRTAP15-1
NextProtQ3LI76 [Medical]
TSGene254950
GENETestsKRTAP15-1
Target ValidationKRTAP15-1
Huge Navigator KRTAP15-1 [HugePedia]
snp3D : Map Gene to Disease254950
BioCentury BCIQKRTAP15-1
ClinGenKRTAP15-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254950
Chemical/Pharm GKB GenePA134911178
Clinical trialKRTAP15-1
Miscellaneous
canSAR (ICR)KRTAP15-1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP15-1
EVEXKRTAP15-1
GoPubMedKRTAP15-1
iHOPKRTAP15-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:12:16 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.