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KRTAP16-1 (keratin associated protein 16-1)

Identity

Alias_symbol (synonym)KAP16.1
Other alias
HGNC (Hugo) KRTAP16-1
LocusID (NCBI) 100505753
Atlas_Id 65076
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41307700 and ends at 41309253 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP16-1   18916
Cards
Entrez_Gene (NCBI)KRTAP16-1  100505753  keratin associated protein 16-1
AliasesKAP16.1
GeneCards (Weizmann)KRTAP16-1
Ensembl hg19 (Hinxton)ENSG00000212657 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000212657 [Gene_View]  chr17:41307700-41309253 [Contig_View]  KRTAP16-1 [Vega]
ICGC DataPortalENSG00000212657
TCGA cBioPortalKRTAP16-1
AceView (NCBI)KRTAP16-1
Genatlas (Paris)KRTAP16-1
WikiGenes100505753
SOURCE (Princeton)KRTAP16-1
Genetics Home Reference (NIH)KRTAP16-1
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP16-1  -     chr17:41307700-41309253 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP16-1  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP16-1 - 17q21.2 [CytoView hg19]  KRTAP16-1 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP16-1 [Mapview hg19]  KRTAP16-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001146182
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP16-1
Cluster EST : UnigeneHs.721600 [ NCBI ]
CGAP (NCI)Hs.721600
Alternative Splicing GalleryENSG00000212657
Gene ExpressionKRTAP16-1 [ NCBI-GEO ]   KRTAP16-1 [ EBI - ARRAY_EXPRESS ]   KRTAP16-1 [ SEEK ]   KRTAP16-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP16-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100505753
GTEX Portal (Tissue expression)KRTAP16-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MUX0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MUX0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MUX0
Splice isoforms : SwissVarA8MUX0
PhosPhoSitePlusA8MUX0
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam13885   
Conserved Domain (NCBI)KRTAP16-1
DMDM Disease mutations100505753
Blocks (Seattle)KRTAP16-1
SuperfamilyA8MUX0
Human Protein AtlasENSG00000212657
Peptide AtlasA8MUX0
IPIIPI00791014   
Protein Interaction databases
DIP (DOE-UCLA)A8MUX0
IntAct (EBI)A8MUX0
FunCoupENSG00000212657
BioGRIDKRTAP16-1
STRING (EMBL)KRTAP16-1
ZODIACKRTAP16-1
Ontologies - Pathways
QuickGOA8MUX0
Ontology : AmiGOcytosol  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  keratinization  keratin filament  
NDEx NetworkKRTAP16-1
Atlas of Cancer Signalling NetworkKRTAP16-1
Wikipedia pathwaysKRTAP16-1
Orthology - Evolution
OrthoDB100505753
GeneTree (enSembl)ENSG00000212657
Phylogenetic Trees/Animal Genes : TreeFamKRTAP16-1
HOVERGENA8MUX0
HOGENOMA8MUX0
Homologs : HomoloGeneKRTAP16-1
Homology/Alignments : Family Browser (UCSC)KRTAP16-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP16-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP16-1
dbVarKRTAP16-1
ClinVarKRTAP16-1
1000_GenomesKRTAP16-1 
Exome Variant ServerKRTAP16-1
ExAC (Exome Aggregation Consortium)KRTAP16-1 (select the gene name)
Genetic variants : HAPMAP100505753
Genomic Variants (DGV)KRTAP16-1 [DGVbeta]
DECIPHERKRTAP16-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP16-1 
Mutations
ICGC Data PortalKRTAP16-1 
TCGA Data PortalKRTAP16-1 
Broad Tumor PortalKRTAP16-1
OASIS PortalKRTAP16-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP16-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP16-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP16-1
DgiDB (Drug Gene Interaction Database)KRTAP16-1
DoCM (Curated mutations)KRTAP16-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP16-1 (select a term)
intoGenKRTAP16-1
Cancer3DKRTAP16-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP16-1
Genetic Testing Registry KRTAP16-1
NextProtA8MUX0 [Medical]
TSGene100505753
GENETestsKRTAP16-1
Target ValidationKRTAP16-1
Huge Navigator KRTAP16-1 [HugePedia]
snp3D : Map Gene to Disease100505753
BioCentury BCIQKRTAP16-1
ClinGenKRTAP16-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505753
Chemical/Pharm GKB GenePA134895884
Clinical trialKRTAP16-1
Miscellaneous
canSAR (ICR)KRTAP16-1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP16-1
EVEXKRTAP16-1
GoPubMedKRTAP16-1
iHOPKRTAP16-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:11 CEST 2017

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