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KRTAP17-1 (keratin associated protein 17-1)

Identity

Alias_symbol (synonym)KAP17.1
Other aliasKRTAP16.1
KRTAP17.1
HGNC (Hugo) KRTAP17-1
LocusID (NCBI) 83902
Atlas_Id 65077
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41314917 and ends at 41315695 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP17-1   18917
Cards
Entrez_Gene (NCBI)KRTAP17-1  83902  keratin associated protein 17-1
AliasesKAP17.1; KRTAP16.1; KRTAP17.1
GeneCards (Weizmann)KRTAP17-1
Ensembl hg19 (Hinxton)ENSG00000186860 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186860 [Gene_View]  chr17:41314917-41315695 [Contig_View]  KRTAP17-1 [Vega]
ICGC DataPortalENSG00000186860
TCGA cBioPortalKRTAP17-1
AceView (NCBI)KRTAP17-1
Genatlas (Paris)KRTAP17-1
WikiGenes83902
SOURCE (Princeton)KRTAP17-1
Genetics Home Reference (NIH)KRTAP17-1
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP17-1  -     chr17:41314917-41315695 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP17-1  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP17-1 - 17q21.2 [CytoView hg19]  KRTAP17-1 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP17-1 [Mapview hg19]  KRTAP17-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ406952 BC069078 BC069297 BC146276 BC146560
RefSeq transcript (Entrez)NM_031964
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP17-1
Cluster EST : UnigeneHs.307009 [ NCBI ]
CGAP (NCI)Hs.307009
Alternative Splicing GalleryENSG00000186860
Gene ExpressionKRTAP17-1 [ NCBI-GEO ]   KRTAP17-1 [ EBI - ARRAY_EXPRESS ]   KRTAP17-1 [ SEEK ]   KRTAP17-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP17-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83902
GTEX Portal (Tissue expression)KRTAP17-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYP8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYP8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYP8
Splice isoforms : SwissVarQ9BYP8
PhosPhoSitePlusQ9BYP8
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KRTAP17-1
DMDM Disease mutations83902
Blocks (Seattle)KRTAP17-1
SuperfamilyQ9BYP8
Human Protein AtlasENSG00000186860
Peptide AtlasQ9BYP8
HPRD13935
IPIIPI00011235   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYP8
IntAct (EBI)Q9BYP8
FunCoupENSG00000186860
BioGRIDKRTAP17-1
STRING (EMBL)KRTAP17-1
ZODIACKRTAP17-1
Ontologies - Pathways
QuickGOQ9BYP8
Ontology : AmiGOcytosol  intermediate filament  keratinization  
Ontology : EGO-EBIcytosol  intermediate filament  keratinization  
NDEx NetworkKRTAP17-1
Atlas of Cancer Signalling NetworkKRTAP17-1
Wikipedia pathwaysKRTAP17-1
Orthology - Evolution
OrthoDB83902
GeneTree (enSembl)ENSG00000186860
Phylogenetic Trees/Animal Genes : TreeFamKRTAP17-1
HOVERGENQ9BYP8
HOGENOMQ9BYP8
Homologs : HomoloGeneKRTAP17-1
Homology/Alignments : Family Browser (UCSC)KRTAP17-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP17-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP17-1
dbVarKRTAP17-1
ClinVarKRTAP17-1
1000_GenomesKRTAP17-1 
Exome Variant ServerKRTAP17-1
ExAC (Exome Aggregation Consortium)KRTAP17-1 (select the gene name)
Genetic variants : HAPMAP83902
Genomic Variants (DGV)KRTAP17-1 [DGVbeta]
DECIPHERKRTAP17-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP17-1 
Mutations
ICGC Data PortalKRTAP17-1 
TCGA Data PortalKRTAP17-1 
Broad Tumor PortalKRTAP17-1
OASIS PortalKRTAP17-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP17-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP17-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP17-1
DgiDB (Drug Gene Interaction Database)KRTAP17-1
DoCM (Curated mutations)KRTAP17-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP17-1 (select a term)
intoGenKRTAP17-1
Cancer3DKRTAP17-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP17-1
Genetic Testing Registry KRTAP17-1
NextProtQ9BYP8 [Medical]
TSGene83902
GENETestsKRTAP17-1
Target ValidationKRTAP17-1
Huge Navigator KRTAP17-1 [HugePedia]
snp3D : Map Gene to Disease83902
BioCentury BCIQKRTAP17-1
ClinGenKRTAP17-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83902
Chemical/Pharm GKB GenePA38763
Clinical trialKRTAP17-1
Miscellaneous
canSAR (ICR)KRTAP17-1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP17-1
EVEXKRTAP17-1
GoPubMedKRTAP17-1
iHOPKRTAP17-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:11 CEST 2017

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