Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRTAP19-3 (keratin associated protein 19-3)

Identity

Alias_symbol (synonym)KAP19.3
Other aliasGTRHP
HGNC (Hugo) KRTAP19-3
LocusID (NCBI) 337970
Atlas_Id 65080
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30491464 and ends at 30491957 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP19-3   18938
Cards
Entrez_Gene (NCBI)KRTAP19-3  337970  keratin associated protein 19-3
AliasesGTRHP; KAP19.3
GeneCards (Weizmann)KRTAP19-3
Ensembl hg19 (Hinxton)ENSG00000244025 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000244025 [Gene_View]  chr21:30491464-30491957 [Contig_View]  KRTAP19-3 [Vega]
ICGC DataPortalENSG00000244025
TCGA cBioPortalKRTAP19-3
AceView (NCBI)KRTAP19-3
Genatlas (Paris)KRTAP19-3
WikiGenes337970
SOURCE (Princeton)KRTAP19-3
Genetics Home Reference (NIH)KRTAP19-3
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP19-3  -     chr21:30491464-30491957 -  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP19-3  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP19-3 - 21q22.11 [CytoView hg19]  KRTAP19-3 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP19-3 [Mapview hg19]  KRTAP19-3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096944 AF139541 BC126280 BC126282 BC148585
RefSeq transcript (Entrez)NM_181609
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP19-3
Cluster EST : UnigeneHs.60480 [ NCBI ]
CGAP (NCI)Hs.60480
Alternative Splicing GalleryENSG00000244025
Gene ExpressionKRTAP19-3 [ NCBI-GEO ]   KRTAP19-3 [ EBI - ARRAY_EXPRESS ]   KRTAP19-3 [ SEEK ]   KRTAP19-3 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP19-3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)337970
GTEX Portal (Tissue expression)KRTAP19-3
Human Protein AtlasENSG00000244025-KRTAP19-3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z4W3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z4W3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z4W3
Splice isoforms : SwissVarQ7Z4W3
PhosPhoSitePlusQ7Z4W3
Domains : Interpro (EBI)KRTAP_type6/8/16/19/20/21   
Domain families : Pfam (Sanger)KRTAP (PF11759)   
Domain families : Pfam (NCBI)pfam11759   
Conserved Domain (NCBI)KRTAP19-3
DMDM"Dise`sm mutations337970
Blocks (Seattle)KRTAP19-3
SuperfamilyQ7Z4W3
Human Protein Atlas [tissue]ENSG00000244025-KRTAP19-3 [tissue]
Peptide AtlasQ7Z4W3
HPRD11207
IPIIPI00376071   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z4W3
IntAct (EBI)Q7Z4W3
FunCoupENSG00000244025
BioGRIDKRTAP19-3
STRING (EMBL)KRTAP19-3
ZODIACKRTAP19-3
Ontologies - Pathways
QuickGOQ7Z4W3
Ontology : AmiGOcytosol  intermediate filament  keratinization  
Ontology : EGO-EBIcytosol  intermediate filament  keratinization  
NDEx NetworkKRTAP19-3
Atlas of Cancer Signalling NetworkKRTAP19-3
Wikipedia pathwaysKRTAP19-3
Orthology - Evolution
OrthoDB337970
GeneTree (enSembl)ENSG00000244025
Phylogenetic Trees/Animal Genes : TreeFamKRTAP19-3
HOVERGENQ7Z4W3
HOGENOMQ7Z4W3
Homologs : HomoloGeneKRTAP19-3
Homology/Alignments : Family Browser (UCSC)KRTAP19-3
Gene fusions - Rearrangements
Fusion: Tumor Portal KRTAP19-3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP19-3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP19-3
dbVarKRTAP19-3
ClinVarKRTAP19-3
1000_GenomesKRTAP19-3 
Exome Variant ServerKRTAP19-3
ExAC (Exome Aggregation Consortium)ENSG00000244025
GNOMAD BrowserENSG00000244025
Genetic variants : HAPMAP337970
Genomic Variants (DGV)KRTAP19-3 [DGVbeta]
DECIPHERKRTAP19-3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP19-3 
Mutations
ICGC Data PortalKRTAP19-3 
TCGA Data PortalKRTAP19-3 
Broad Tumor PortalKRTAP19-3
OASIS PortalKRTAP19-3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP19-3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP19-3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP19-3
DgiDB (Drug Gene Interaction Database)KRTAP19-3
DoCM (Curated mutations)KRTAP19-3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP19-3 (select a term)
intoGenKRTAP19-3
Cancer3DKRTAP19-3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP19-3
Genetic Testing Registry KRTAP19-3
NextProtQ7Z4W3 [Medical]
TSGene337970
GENETestsKRTAP19-3
Target ValidationKRTAP19-3
Huge Navigator KRTAP19-3 [HugePedia]
snp3D : Map Gene to Disease337970
BioCentury BCIQKRTAP19-3
ClinGenKRTAP19-3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD337970
Chemical/Pharm GKB GenePA134977711
Clinical trialKRTAP19-3
Miscellaneous
canSAR (ICR)KRTAP19-3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP19-3
EVEXKRTAP19-3
GoPubMedKRTAP19-3
iHOPKRTAP19-3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:53:03 CET 2017

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