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KRTAP19-4 (keratin associated protein 19-4)

Identity

Alias_symbol (synonym)KAP19.4
Other alias
HGNC (Hugo) KRTAP19-4
LocusID (NCBI) 337971
Atlas_Id 65081
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 31869174 and ends at 31869428 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP19-4   18939
Cards
Entrez_Gene (NCBI)KRTAP19-4  337971  keratin associated protein 19-4
AliasesKAP19.4
GeneCards (Weizmann)KRTAP19-4
Ensembl hg19 (Hinxton)ENSG00000186967 [Gene_View]  chr21:31869174-31869428 [Contig_View]  KRTAP19-4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186967 [Gene_View]  chr21:31869174-31869428 [Contig_View]  KRTAP19-4 [Vega]
ICGC DataPortalENSG00000186967
TCGA cBioPortalKRTAP19-4
AceView (NCBI)KRTAP19-4
Genatlas (Paris)KRTAP19-4
WikiGenes337971
SOURCE (Princeton)KRTAP19-4
Genetics Home Reference (NIH)KRTAP19-4
Genomic and cartography
GoldenPath hg19 (UCSC)KRTAP19-4  -     chr21:31869174-31869428 -  21q22.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRTAP19-4  -     21q22.11   [Description]    (hg38-Dec_2013)
EnsemblKRTAP19-4 - 21q22.11 [CytoView hg19]  KRTAP19-4 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP19-4 [Mapview hg19]  KRTAP19-4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096945 BC117197 BC117199 HQ258034 HQ258698
RefSeq transcript (Entrez)NM_181610
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929426
Consensus coding sequences : CCDS (NCBI)KRTAP19-4
Cluster EST : UnigeneHs.553693 [ NCBI ]
CGAP (NCI)Hs.553693
Alternative Splicing GalleryENSG00000186967
Gene ExpressionKRTAP19-4 [ NCBI-GEO ]   KRTAP19-4 [ EBI - ARRAY_EXPRESS ]   KRTAP19-4 [ SEEK ]   KRTAP19-4 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP19-4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)337971
GTEX Portal (Tissue expression)KRTAP19-4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3LI73   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3LI73  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3LI73
Splice isoforms : SwissVarQ3LI73
PhosPhoSitePlusQ3LI73
Domains : Interpro (EBI)KRTAP_type6/8/16/19/20   
Domain families : Pfam (Sanger)KRTAP (PF11759)   
Domain families : Pfam (NCBI)pfam11759   
Conserved Domain (NCBI)KRTAP19-4
DMDM Disease mutations337971
Blocks (Seattle)KRTAP19-4
SuperfamilyQ3LI73
Human Protein AtlasENSG00000186967
Peptide AtlasQ3LI73
HPRD11208
IPIIPI00373951   
Protein Interaction databases
DIP (DOE-UCLA)Q3LI73
IntAct (EBI)Q3LI73
FunCoupENSG00000186967
BioGRIDKRTAP19-4
STRING (EMBL)KRTAP19-4
ZODIACKRTAP19-4
Ontologies - Pathways
QuickGOQ3LI73
Ontology : AmiGOintermediate filament  
Ontology : EGO-EBIintermediate filament  
NDEx NetworkKRTAP19-4
Atlas of Cancer Signalling NetworkKRTAP19-4
Wikipedia pathwaysKRTAP19-4
Orthology - Evolution
OrthoDB337971
GeneTree (enSembl)ENSG00000186967
Phylogenetic Trees/Animal Genes : TreeFamKRTAP19-4
HOVERGENQ3LI73
HOGENOMQ3LI73
Homologs : HomoloGeneKRTAP19-4
Homology/Alignments : Family Browser (UCSC)KRTAP19-4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP19-4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP19-4
dbVarKRTAP19-4
ClinVarKRTAP19-4
1000_GenomesKRTAP19-4 
Exome Variant ServerKRTAP19-4
ExAC (Exome Aggregation Consortium)KRTAP19-4 (select the gene name)
Genetic variants : HAPMAP337971
Genomic Variants (DGV)KRTAP19-4 [DGVbeta]
DECIPHER (Syndromes)21:31869174-31869428  ENSG00000186967
CONAN: Copy Number AnalysisKRTAP19-4 
Mutations
ICGC Data PortalKRTAP19-4 
TCGA Data PortalKRTAP19-4 
Broad Tumor PortalKRTAP19-4
OASIS PortalKRTAP19-4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP19-4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP19-4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP19-4
DgiDB (Drug Gene Interaction Database)KRTAP19-4
DoCM (Curated mutations)KRTAP19-4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP19-4 (select a term)
intoGenKRTAP19-4
Cancer3DKRTAP19-4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP19-4
Genetic Testing Registry KRTAP19-4
NextProtQ3LI73 [Medical]
TSGene337971
GENETestsKRTAP19-4
Huge Navigator KRTAP19-4 [HugePedia]
snp3D : Map Gene to Disease337971
BioCentury BCIQKRTAP19-4
ClinGenKRTAP19-4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD337971
Chemical/Pharm GKB GenePA134984740
Clinical trialKRTAP19-4
Miscellaneous
canSAR (ICR)KRTAP19-4 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP19-4
EVEXKRTAP19-4
GoPubMedKRTAP19-4
iHOPKRTAP19-4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:10:25 CET 2017

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