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KRTAP19-5 (keratin associated protein 19-5)

Identity

Alias_symbol (synonym)KAP19.5
Other alias
HGNC (Hugo) KRTAP19-5
LocusID (NCBI) 337972
Atlas_Id 65082
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30501872 and ends at 30502090 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP19-5   18940
Cards
Entrez_Gene (NCBI)KRTAP19-5  337972  keratin associated protein 19-5
AliasesKAP19.5
GeneCards (Weizmann)KRTAP19-5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:30501872-30502090 [Contig_View]  KRTAP19-5 [Vega]
TCGA cBioPortalKRTAP19-5
AceView (NCBI)KRTAP19-5
Genatlas (Paris)KRTAP19-5
WikiGenes337972
SOURCE (Princeton)KRTAP19-5
Genetics Home Reference (NIH)KRTAP19-5
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP19-5  -     chr21:30501872-30502090 -  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP19-5  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP19-5 - 21q22.11 [CytoView hg19]  KRTAP19-5 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP19-5 [Mapview hg19]  KRTAP19-5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096946 BC100836 BC100837 BC100838 BC100839
RefSeq transcript (Entrez)NM_181611
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP19-5
Cluster EST : UnigeneHs.553694 [ NCBI ]
CGAP (NCI)Hs.553694
Gene ExpressionKRTAP19-5 [ NCBI-GEO ]   KRTAP19-5 [ EBI - ARRAY_EXPRESS ]   KRTAP19-5 [ SEEK ]   KRTAP19-5 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP19-5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)337972
GTEX Portal (Tissue expression)KRTAP19-5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3LI72   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3LI72  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3LI72
Splice isoforms : SwissVarQ3LI72
PhosPhoSitePlusQ3LI72
Domains : Interpro (EBI)KRTAP_type6/8/16/19/20/21   
Domain families : Pfam (Sanger)KRTAP (PF11759)   
Domain families : Pfam (NCBI)pfam11759   
Conserved Domain (NCBI)KRTAP19-5
DMDM Disease mutations337972
Blocks (Seattle)KRTAP19-5
SuperfamilyQ3LI72
Peptide AtlasQ3LI72
HPRD11209
IPIIPI00373952   
Protein Interaction databases
DIP (DOE-UCLA)Q3LI72
IntAct (EBI)Q3LI72
BioGRIDKRTAP19-5
STRING (EMBL)KRTAP19-5
ZODIACKRTAP19-5
Ontologies - Pathways
QuickGOQ3LI72
Ontology : AmiGOprotein binding  cytosol  intermediate filament  keratinization  
Ontology : EGO-EBIprotein binding  cytosol  intermediate filament  keratinization  
NDEx NetworkKRTAP19-5
Atlas of Cancer Signalling NetworkKRTAP19-5
Wikipedia pathwaysKRTAP19-5
Orthology - Evolution
OrthoDB337972
Phylogenetic Trees/Animal Genes : TreeFamKRTAP19-5
HOVERGENQ3LI72
HOGENOMQ3LI72
Homologs : HomoloGeneKRTAP19-5
Homology/Alignments : Family Browser (UCSC)KRTAP19-5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP19-5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP19-5
dbVarKRTAP19-5
ClinVarKRTAP19-5
1000_GenomesKRTAP19-5 
Exome Variant ServerKRTAP19-5
ExAC (Exome Aggregation Consortium)KRTAP19-5 (select the gene name)
Genetic variants : HAPMAP337972
Genomic Variants (DGV)KRTAP19-5 [DGVbeta]
DECIPHERKRTAP19-5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP19-5 
Mutations
ICGC Data PortalKRTAP19-5 
TCGA Data PortalKRTAP19-5 
Broad Tumor PortalKRTAP19-5
OASIS PortalKRTAP19-5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP19-5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP19-5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP19-5
DgiDB (Drug Gene Interaction Database)KRTAP19-5
DoCM (Curated mutations)KRTAP19-5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP19-5 (select a term)
intoGenKRTAP19-5
Cancer3DKRTAP19-5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP19-5
Genetic Testing Registry KRTAP19-5
NextProtQ3LI72 [Medical]
TSGene337972
GENETestsKRTAP19-5
Target ValidationKRTAP19-5
Huge Navigator KRTAP19-5 [HugePedia]
snp3D : Map Gene to Disease337972
BioCentury BCIQKRTAP19-5
ClinGenKRTAP19-5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD337972
Chemical/Pharm GKB GenePA134992782
Clinical trialKRTAP19-5
Miscellaneous
canSAR (ICR)KRTAP19-5 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP19-5
EVEXKRTAP19-5
GoPubMedKRTAP19-5
iHOPKRTAP19-5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:17 CEST 2017

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