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KRTAP19-6 (keratin associated protein 19-6)

Identity

Alias_symbol (synonym)KAP19.6
Other alias
HGNC (Hugo) KRTAP19-6
LocusID (NCBI) 337973
Atlas_Id 65083
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30541535 and ends at 30541864 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP19-6   18941
Cards
Entrez_Gene (NCBI)KRTAP19-6  337973  keratin associated protein 19-6
AliasesKAP19.6
GeneCards (Weizmann)KRTAP19-6
Ensembl hg19 (Hinxton)ENSG00000186925 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186925 [Gene_View]  chr21:30541535-30541864 [Contig_View]  KRTAP19-6 [Vega]
ICGC DataPortalENSG00000186925
TCGA cBioPortalKRTAP19-6
AceView (NCBI)KRTAP19-6
Genatlas (Paris)KRTAP19-6
WikiGenes337973
SOURCE (Princeton)KRTAP19-6
Genetics Home Reference (NIH)KRTAP19-6
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP19-6  -     chr21:30541535-30541864 -  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP19-6  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP19-6 - 21q22.11 [CytoView hg19]  KRTAP19-6 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP19-6 [Mapview hg19]  KRTAP19-6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096947 AB096948 BC101813 BC101815 BC156856
RefSeq transcript (Entrez)NM_001303120 NM_181612
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP19-6
Cluster EST : UnigeneHs.553695 [ NCBI ]
CGAP (NCI)Hs.553695
Alternative Splicing GalleryENSG00000186925
Gene ExpressionKRTAP19-6 [ NCBI-GEO ]   KRTAP19-6 [ EBI - ARRAY_EXPRESS ]   KRTAP19-6 [ SEEK ]   KRTAP19-6 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP19-6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)337973
GTEX Portal (Tissue expression)KRTAP19-6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3LI70   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3LI70  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3LI70
Splice isoforms : SwissVarQ3LI70
PhosPhoSitePlusQ3LI70
Domains : Interpro (EBI)KRTAP_type6/8/16/19/20/21   
Domain families : Pfam (Sanger)KRTAP (PF11759)   
Domain families : Pfam (NCBI)pfam11759   
Conserved Domain (NCBI)KRTAP19-6
DMDM Disease mutations337973
Blocks (Seattle)KRTAP19-6
SuperfamilyQ3LI70
Human Protein AtlasENSG00000186925
Peptide AtlasQ3LI70
HPRD11210
IPIIPI01019040   IPI00373953   
Protein Interaction databases
DIP (DOE-UCLA)Q3LI70
IntAct (EBI)Q3LI70
FunCoupENSG00000186925
BioGRIDKRTAP19-6
STRING (EMBL)KRTAP19-6
ZODIACKRTAP19-6
Ontologies - Pathways
QuickGOQ3LI70
Ontology : AmiGOcytosol  intermediate filament  keratinization  
Ontology : EGO-EBIcytosol  intermediate filament  keratinization  
NDEx NetworkKRTAP19-6
Atlas of Cancer Signalling NetworkKRTAP19-6
Wikipedia pathwaysKRTAP19-6
Orthology - Evolution
OrthoDB337973
GeneTree (enSembl)ENSG00000186925
Phylogenetic Trees/Animal Genes : TreeFamKRTAP19-6
HOVERGENQ3LI70
HOGENOMQ3LI70
Homologs : HomoloGeneKRTAP19-6
Homology/Alignments : Family Browser (UCSC)KRTAP19-6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP19-6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP19-6
dbVarKRTAP19-6
ClinVarKRTAP19-6
1000_GenomesKRTAP19-6 
Exome Variant ServerKRTAP19-6
ExAC (Exome Aggregation Consortium)KRTAP19-6 (select the gene name)
Genetic variants : HAPMAP337973
Genomic Variants (DGV)KRTAP19-6 [DGVbeta]
DECIPHERKRTAP19-6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP19-6 
Mutations
ICGC Data PortalKRTAP19-6 
TCGA Data PortalKRTAP19-6 
Broad Tumor PortalKRTAP19-6
OASIS PortalKRTAP19-6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP19-6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP19-6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP19-6
DgiDB (Drug Gene Interaction Database)KRTAP19-6
DoCM (Curated mutations)KRTAP19-6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP19-6 (select a term)
intoGenKRTAP19-6
Cancer3DKRTAP19-6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP19-6
Genetic Testing Registry KRTAP19-6
NextProtQ3LI70 [Medical]
TSGene337973
GENETestsKRTAP19-6
Target ValidationKRTAP19-6
Huge Navigator KRTAP19-6 [HugePedia]
snp3D : Map Gene to Disease337973
BioCentury BCIQKRTAP19-6
ClinGenKRTAP19-6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD337973
Chemical/Pharm GKB GenePA134901069
Clinical trialKRTAP19-6
Miscellaneous
canSAR (ICR)KRTAP19-6 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP19-6
EVEXKRTAP19-6
GoPubMedKRTAP19-6
iHOPKRTAP19-6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:18 CEST 2017

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