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KRTAP19-8 (keratin associated protein 19-8)

Identity

Other alias-
HGNC (Hugo) KRTAP19-8
LocusID (NCBI) 728299
Atlas_Id 65085
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 31038159 and ends at 31038476 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP19-8   33898
Cards
Entrez_Gene (NCBI)KRTAP19-8  728299  keratin associated protein 19-8
Aliases
GeneCards (Weizmann)KRTAP19-8
Ensembl hg19 (Hinxton)ENSG00000206102 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206102 [Gene_View]  chr21:31038159-31038476 [Contig_View]  KRTAP19-8 [Vega]
ICGC DataPortalENSG00000206102
TCGA cBioPortalKRTAP19-8
AceView (NCBI)KRTAP19-8
Genatlas (Paris)KRTAP19-8
WikiGenes728299
SOURCE (Princeton)KRTAP19-8
Genetics Home Reference (NIH)KRTAP19-8
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP19-8  -     chr21:31038159-31038476 -  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP19-8  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP19-8 - 21q22.11 [CytoView hg19]  KRTAP19-8 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP19-8 [Mapview hg19]  KRTAP19-8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096964
RefSeq transcript (Entrez)NM_001099219
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP19-8
Cluster EST : UnigeneHs.580875 [ NCBI ]
CGAP (NCI)Hs.580875
Alternative Splicing GalleryENSG00000206102
Gene ExpressionKRTAP19-8 [ NCBI-GEO ]   KRTAP19-8 [ EBI - ARRAY_EXPRESS ]   KRTAP19-8 [ SEEK ]   KRTAP19-8 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP19-8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728299
GTEX Portal (Tissue expression)KRTAP19-8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3LI54   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3LI54  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3LI54
Splice isoforms : SwissVarQ3LI54
PhosPhoSitePlusQ3LI54
Domains : Interpro (EBI)KRTAP_type6/8/16/19/20/21   
Domain families : Pfam (Sanger)KRTAP (PF11759)   
Domain families : Pfam (NCBI)pfam11759   
Conserved Domain (NCBI)KRTAP19-8
DMDM Disease mutations728299
Blocks (Seattle)KRTAP19-8
SuperfamilyQ3LI54
Human Protein AtlasENSG00000206102
Peptide AtlasQ3LI54
IPIIPI00654819   
Protein Interaction databases
DIP (DOE-UCLA)Q3LI54
IntAct (EBI)Q3LI54
FunCoupENSG00000206102
BioGRIDKRTAP19-8
STRING (EMBL)KRTAP19-8
ZODIACKRTAP19-8
Ontologies - Pathways
QuickGOQ3LI54
Ontology : AmiGOcytosol  intermediate filament  keratinization  
Ontology : EGO-EBIcytosol  intermediate filament  keratinization  
NDEx NetworkKRTAP19-8
Atlas of Cancer Signalling NetworkKRTAP19-8
Wikipedia pathwaysKRTAP19-8
Orthology - Evolution
OrthoDB728299
GeneTree (enSembl)ENSG00000206102
Phylogenetic Trees/Animal Genes : TreeFamKRTAP19-8
HOVERGENQ3LI54
HOGENOMQ3LI54
Homologs : HomoloGeneKRTAP19-8
Homology/Alignments : Family Browser (UCSC)KRTAP19-8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP19-8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP19-8
dbVarKRTAP19-8
ClinVarKRTAP19-8
1000_GenomesKRTAP19-8 
Exome Variant ServerKRTAP19-8
ExAC (Exome Aggregation Consortium)KRTAP19-8 (select the gene name)
Genetic variants : HAPMAP728299
Genomic Variants (DGV)KRTAP19-8 [DGVbeta]
DECIPHERKRTAP19-8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP19-8 
Mutations
ICGC Data PortalKRTAP19-8 
TCGA Data PortalKRTAP19-8 
Broad Tumor PortalKRTAP19-8
OASIS PortalKRTAP19-8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP19-8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP19-8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP19-8
DgiDB (Drug Gene Interaction Database)KRTAP19-8
DoCM (Curated mutations)KRTAP19-8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP19-8 (select a term)
intoGenKRTAP19-8
Cancer3DKRTAP19-8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP19-8
Genetic Testing Registry KRTAP19-8
NextProtQ3LI54 [Medical]
TSGene728299
GENETestsKRTAP19-8
Target ValidationKRTAP19-8
Huge Navigator KRTAP19-8 [HugePedia]
snp3D : Map Gene to Disease728299
BioCentury BCIQKRTAP19-8
ClinGenKRTAP19-8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728299
Chemical/Pharm GKB GenePA162393748
Clinical trialKRTAP19-8
Miscellaneous
canSAR (ICR)KRTAP19-8 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP19-8
EVEXKRTAP19-8
GoPubMedKRTAP19-8
iHOPKRTAP19-8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:13 CEST 2017

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