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KRTAP2-1 (keratin associated protein 2-1)

Identity

Alias_symbol (synonym)KAP2.1A
Other aliasKRTAP2.1A
HGNC (Hugo) KRTAP2-1
LocusID (NCBI) 81872
Atlas_Id 65090
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41046541 and ends at 41047316 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP2-1   16775
Cards
Entrez_Gene (NCBI)KRTAP2-1  81872  keratin associated protein 2-1
AliasesKAP2.1A; KRTAP2.1A
GeneCards (Weizmann)KRTAP2-1
Ensembl hg19 (Hinxton)ENSG00000212725 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000212725 [Gene_View]  chr17:41046541-41047316 [Contig_View]  KRTAP2-1 [Vega]
ICGC DataPortalENSG00000212725
TCGA cBioPortalKRTAP2-1
AceView (NCBI)KRTAP2-1
Genatlas (Paris)KRTAP2-1
WikiGenes81872
SOURCE (Princeton)KRTAP2-1
Genetics Home Reference (NIH)KRTAP2-1
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP2-1  -     chr17:41046541-41047316 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP2-1  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP2-1 - 17q21.2 [CytoView hg19]  KRTAP2-1 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP2-1 [Mapview hg19]  KRTAP2-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ296345
RefSeq transcript (Entrez)NM_001123387 NM_030977
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP2-1
Cluster EST : UnigeneHs.528921 [ NCBI ]
CGAP (NCI)Hs.528921
Alternative Splicing GalleryENSG00000212725
Gene ExpressionKRTAP2-1 [ NCBI-GEO ]   KRTAP2-1 [ EBI - ARRAY_EXPRESS ]   KRTAP2-1 [ SEEK ]   KRTAP2-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP2-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81872
GTEX Portal (Tissue expression)KRTAP2-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYU5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYU5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYU5
Splice isoforms : SwissVarQ9BYU5
PhosPhoSitePlusQ9BYU5
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2 (PF01500)    Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam01500    pfam13885   
Conserved Domain (NCBI)KRTAP2-1
DMDM Disease mutations81872
Blocks (Seattle)KRTAP2-1
SuperfamilyQ9BYU5
Human Protein AtlasENSG00000212725
Peptide AtlasQ9BYU5
IPIIPI00013265   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYU5
IntAct (EBI)Q9BYU5
FunCoupENSG00000212725
BioGRIDKRTAP2-1
STRING (EMBL)KRTAP2-1
ZODIACKRTAP2-1
Ontologies - Pathways
QuickGOQ9BYU5
Ontology : AmiGOcytosol  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  keratinization  keratin filament  
NDEx NetworkKRTAP2-1
Atlas of Cancer Signalling NetworkKRTAP2-1
Wikipedia pathwaysKRTAP2-1
Orthology - Evolution
OrthoDB81872
GeneTree (enSembl)ENSG00000212725
Phylogenetic Trees/Animal Genes : TreeFamKRTAP2-1
HOVERGENQ9BYU5
HOGENOMQ9BYU5
Homologs : HomoloGeneKRTAP2-1
Homology/Alignments : Family Browser (UCSC)KRTAP2-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP2-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP2-1
dbVarKRTAP2-1
ClinVarKRTAP2-1
1000_GenomesKRTAP2-1 
Exome Variant ServerKRTAP2-1
ExAC (Exome Aggregation Consortium)KRTAP2-1 (select the gene name)
Genetic variants : HAPMAP81872
Genomic Variants (DGV)KRTAP2-1 [DGVbeta]
DECIPHERKRTAP2-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP2-1 
Mutations
ICGC Data PortalKRTAP2-1 
TCGA Data PortalKRTAP2-1 
Broad Tumor PortalKRTAP2-1
OASIS PortalKRTAP2-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP2-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP2-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP2-1
DgiDB (Drug Gene Interaction Database)KRTAP2-1
DoCM (Curated mutations)KRTAP2-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP2-1 (select a term)
intoGenKRTAP2-1
Cancer3DKRTAP2-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP2-1
Genetic Testing Registry KRTAP2-1
NextProtQ9BYU5 [Medical]
TSGene81872
GENETestsKRTAP2-1
Target ValidationKRTAP2-1
Huge Navigator KRTAP2-1 [HugePedia]
snp3D : Map Gene to Disease81872
BioCentury BCIQKRTAP2-1
ClinGenKRTAP2-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81872
Chemical/Pharm GKB GenePA38415
Clinical trialKRTAP2-1
Miscellaneous
canSAR (ICR)KRTAP2-1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP2-1
EVEXKRTAP2-1
GoPubMedKRTAP2-1
iHOPKRTAP2-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:19 CEST 2017

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