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KRTAP2-2 (keratin associated protein 2-2)

Identity

Alias_symbol (synonym)KAP2.2
Other alias
HGNC (Hugo) KRTAP2-2
LocusID (NCBI) 728279
Atlas_Id 65094
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41054499 and ends at 41055211 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP2-2   18905
Cards
Entrez_Gene (NCBI)KRTAP2-2  728279  keratin associated protein 2-2
AliasesKAP2.2
GeneCards (Weizmann)KRTAP2-2
Ensembl hg19 (Hinxton)ENSG00000214518 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214518 [Gene_View]  chr17:41054499-41055211 [Contig_View]  KRTAP2-2 [Vega]
ICGC DataPortalENSG00000214518
TCGA cBioPortalKRTAP2-2
AceView (NCBI)KRTAP2-2
Genatlas (Paris)KRTAP2-2
WikiGenes728279
SOURCE (Princeton)KRTAP2-2
Genetics Home Reference (NIH)KRTAP2-2
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP2-2  -     chr17:41054499-41055211 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP2-2  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP2-2 - 17q21.2 [CytoView hg19]  KRTAP2-2 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP2-2 [Mapview hg19]  KRTAP2-2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ302536
RefSeq transcript (Entrez)NM_033032
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP2-2
Cluster EST : UnigeneHs.650131 [ NCBI ]
CGAP (NCI)Hs.650131
Alternative Splicing GalleryENSG00000214518
Gene ExpressionKRTAP2-2 [ NCBI-GEO ]   KRTAP2-2 [ EBI - ARRAY_EXPRESS ]   KRTAP2-2 [ SEEK ]   KRTAP2-2 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP2-2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728279
GTEX Portal (Tissue expression)KRTAP2-2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYT5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYT5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYT5
Splice isoforms : SwissVarQ9BYT5
PhosPhoSitePlusQ9BYT5
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2 (PF01500)   
Domain families : Pfam (NCBI)pfam01500   
Conserved Domain (NCBI)KRTAP2-2
DMDM Disease mutations728279
Blocks (Seattle)KRTAP2-2
SuperfamilyQ9BYT5
Human Protein AtlasENSG00000214518
Peptide AtlasQ9BYT5
IPIIPI00890697   IPI00455354   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYT5
IntAct (EBI)Q9BYT5
FunCoupENSG00000214518
BioGRIDKRTAP2-2
STRING (EMBL)KRTAP2-2
ZODIACKRTAP2-2
Ontologies - Pathways
QuickGOQ9BYT5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkKRTAP2-2
Atlas of Cancer Signalling NetworkKRTAP2-2
Wikipedia pathwaysKRTAP2-2
Orthology - Evolution
OrthoDB728279
GeneTree (enSembl)ENSG00000214518
Phylogenetic Trees/Animal Genes : TreeFamKRTAP2-2
HOVERGENQ9BYT5
HOGENOMQ9BYT5
Homologs : HomoloGeneKRTAP2-2
Homology/Alignments : Family Browser (UCSC)KRTAP2-2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP2-2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP2-2
dbVarKRTAP2-2
ClinVarKRTAP2-2
1000_GenomesKRTAP2-2 
Exome Variant ServerKRTAP2-2
ExAC (Exome Aggregation Consortium)KRTAP2-2 (select the gene name)
Genetic variants : HAPMAP728279
Genomic Variants (DGV)KRTAP2-2 [DGVbeta]
DECIPHERKRTAP2-2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP2-2 
Mutations
ICGC Data PortalKRTAP2-2 
TCGA Data PortalKRTAP2-2 
Broad Tumor PortalKRTAP2-2
OASIS PortalKRTAP2-2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP2-2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP2-2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP2-2
DgiDB (Drug Gene Interaction Database)KRTAP2-2
DoCM (Curated mutations)KRTAP2-2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP2-2 (select a term)
intoGenKRTAP2-2
Cancer3DKRTAP2-2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP2-2
Genetic Testing Registry KRTAP2-2
NextProtQ9BYT5 [Medical]
TSGene728279
GENETestsKRTAP2-2
Target ValidationKRTAP2-2
Huge Navigator KRTAP2-2 [HugePedia]
snp3D : Map Gene to Disease728279
BioCentury BCIQKRTAP2-2
ClinGenKRTAP2-2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728279
Chemical/Pharm GKB GenePA38753
Clinical trialKRTAP2-2
Miscellaneous
canSAR (ICR)KRTAP2-2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP2-2
EVEXKRTAP2-2
GoPubMedKRTAP2-2
iHOPKRTAP2-2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:19 CEST 2017

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