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KRTAP2-3 (keratin associated protein 2-3)

Identity

Alias_symbol (synonym)KAP2.3
Other aliasKRTAP2.3
HGNC (Hugo) KRTAP2-3
LocusID (NCBI) 730755
Atlas_Id 65097
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41059241 and ends at 41060092 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP2-3   18906
Cards
Entrez_Gene (NCBI)KRTAP2-3  730755  keratin associated protein 2-3
AliasesKAP2.3; KRTAP2.3
GeneCards (Weizmann)KRTAP2-3
Ensembl hg19 (Hinxton)ENSG00000212724 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000212724 [Gene_View]  chr17:41059241-41060092 [Contig_View]  KRTAP2-3 [Vega]
ICGC DataPortalENSG00000212724
TCGA cBioPortalKRTAP2-3
AceView (NCBI)KRTAP2-3
Genatlas (Paris)KRTAP2-3
WikiGenes730755
SOURCE (Princeton)KRTAP2-3
Genetics Home Reference (NIH)KRTAP2-3
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP2-3  -     chr17:41059241-41060092 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP2-3  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP2-3 - 17q21.2 [CytoView hg19]  KRTAP2-3 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP2-3 [Mapview hg19]  KRTAP2-3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC012486 BC063625
RefSeq transcript (Entrez)NM_001165252
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP2-3
Cluster EST : UnigeneHs.406714 [ NCBI ]
CGAP (NCI)Hs.406714
Alternative Splicing GalleryENSG00000212724
Gene ExpressionKRTAP2-3 [ NCBI-GEO ]   KRTAP2-3 [ EBI - ARRAY_EXPRESS ]   KRTAP2-3 [ SEEK ]   KRTAP2-3 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP2-3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)730755
GTEX Portal (Tissue expression)KRTAP2-3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7H8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7H8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7H8
Splice isoforms : SwissVarP0C7H8
PhosPhoSitePlusP0C7H8
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2 (PF01500)    Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam01500    pfam13885   
Conserved Domain (NCBI)KRTAP2-3
DMDM Disease mutations730755
Blocks (Seattle)KRTAP2-3
SuperfamilyP0C7H8
Human Protein AtlasENSG00000212724
Peptide AtlasP0C7H8
Protein Interaction databases
DIP (DOE-UCLA)P0C7H8
IntAct (EBI)P0C7H8
FunCoupENSG00000212724
BioGRIDKRTAP2-3
STRING (EMBL)KRTAP2-3
ZODIACKRTAP2-3
Ontologies - Pathways
QuickGOP0C7H8
Ontology : AmiGOprotein binding  cytosol  keratinization  keratin filament  
Ontology : EGO-EBIprotein binding  cytosol  keratinization  keratin filament  
NDEx NetworkKRTAP2-3
Atlas of Cancer Signalling NetworkKRTAP2-3
Wikipedia pathwaysKRTAP2-3
Orthology - Evolution
OrthoDB730755
GeneTree (enSembl)ENSG00000212724
Phylogenetic Trees/Animal Genes : TreeFamKRTAP2-3
HOVERGENP0C7H8
HOGENOMP0C7H8
Homologs : HomoloGeneKRTAP2-3
Homology/Alignments : Family Browser (UCSC)KRTAP2-3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP2-3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP2-3
dbVarKRTAP2-3
ClinVarKRTAP2-3
1000_GenomesKRTAP2-3 
Exome Variant ServerKRTAP2-3
ExAC (Exome Aggregation Consortium)KRTAP2-3 (select the gene name)
Genetic variants : HAPMAP730755
Genomic Variants (DGV)KRTAP2-3 [DGVbeta]
DECIPHERKRTAP2-3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP2-3 
Mutations
ICGC Data PortalKRTAP2-3 
TCGA Data PortalKRTAP2-3 
Broad Tumor PortalKRTAP2-3
OASIS PortalKRTAP2-3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP2-3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP2-3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP2-3
DgiDB (Drug Gene Interaction Database)KRTAP2-3
DoCM (Curated mutations)KRTAP2-3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP2-3 (select a term)
intoGenKRTAP2-3
Cancer3DKRTAP2-3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP2-3
Genetic Testing Registry KRTAP2-3
NextProtP0C7H8 [Medical]
TSGene730755
GENETestsKRTAP2-3
Target ValidationKRTAP2-3
Huge Navigator KRTAP2-3 [HugePedia]
snp3D : Map Gene to Disease730755
BioCentury BCIQKRTAP2-3
ClinGenKRTAP2-3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD730755
Chemical/Pharm GKB GenePA38754
Clinical trialKRTAP2-3
Miscellaneous
canSAR (ICR)KRTAP2-3 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP2-3
EVEXKRTAP2-3
GoPubMedKRTAP2-3
iHOPKRTAP2-3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Aug 1 16:18:49 CEST 2017

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