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KRTAP2-4 (keratin associated protein 2-4)

Identity

Alias_symbol (synonym)KAP2.4
Other aliasKAP2.1B
KRTAP2.4
HGNC (Hugo) KRTAP2-4
LocusID (NCBI) 85294
Atlas_Id 65099
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 41065116 and ends at 41065879 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP2-4   18891
Cards
Entrez_Gene (NCBI)KRTAP2-4  85294  keratin associated protein 2-4
AliasesKAP2.1B; KAP2.4; KRTAP2.4
GeneCards (Weizmann)KRTAP2-4
Ensembl hg19 (Hinxton)ENSG00000213417 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213417 [Gene_View]  chr17:41065116-41065879 [Contig_View]  KRTAP2-4 [Vega]
ICGC DataPortalENSG00000213417
TCGA cBioPortalKRTAP2-4
AceView (NCBI)KRTAP2-4
Genatlas (Paris)KRTAP2-4
WikiGenes85294
SOURCE (Princeton)KRTAP2-4
Genetics Home Reference (NIH)KRTAP2-4
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP2-4  -     chr17:41065116-41065879 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP2-4  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblKRTAP2-4 - 17q21.2 [CytoView hg19]  KRTAP2-4 - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIKRTAP2-4 [Mapview hg19]  KRTAP2-4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ406929 AJ406930 BC101147 BC101148 BC101149
RefSeq transcript (Entrez)NM_033184
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP2-4
Cluster EST : UnigeneHs.560502 [ NCBI ]
CGAP (NCI)Hs.560502
Alternative Splicing GalleryENSG00000213417
Gene ExpressionKRTAP2-4 [ NCBI-GEO ]   KRTAP2-4 [ EBI - ARRAY_EXPRESS ]   KRTAP2-4 [ SEEK ]   KRTAP2-4 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP2-4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85294
GTEX Portal (Tissue expression)KRTAP2-4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYR9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYR9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYR9
Splice isoforms : SwissVarQ9BYR9
PhosPhoSitePlusQ9BYR9
Domains : Interpro (EBI)KAP   
Domain families : Pfam (Sanger)Keratin_B2 (PF01500)    Keratin_B2_2 (PF13885)   
Domain families : Pfam (NCBI)pfam01500    pfam13885   
Conserved Domain (NCBI)KRTAP2-4
DMDM Disease mutations85294
Blocks (Seattle)KRTAP2-4
SuperfamilyQ9BYR9
Human Protein AtlasENSG00000213417
Peptide AtlasQ9BYR9
HPRD13936
Protein Interaction databases
DIP (DOE-UCLA)Q9BYR9
IntAct (EBI)Q9BYR9
FunCoupENSG00000213417
BioGRIDKRTAP2-4
STRING (EMBL)KRTAP2-4
ZODIACKRTAP2-4
Ontologies - Pathways
QuickGOQ9BYR9
Ontology : AmiGOcytosol  keratinization  keratin filament  
Ontology : EGO-EBIcytosol  keratinization  keratin filament  
NDEx NetworkKRTAP2-4
Atlas of Cancer Signalling NetworkKRTAP2-4
Wikipedia pathwaysKRTAP2-4
Orthology - Evolution
OrthoDB85294
GeneTree (enSembl)ENSG00000213417
Phylogenetic Trees/Animal Genes : TreeFamKRTAP2-4
HOVERGENQ9BYR9
HOGENOMQ9BYR9
Homologs : HomoloGeneKRTAP2-4
Homology/Alignments : Family Browser (UCSC)KRTAP2-4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP2-4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP2-4
dbVarKRTAP2-4
ClinVarKRTAP2-4
1000_GenomesKRTAP2-4 
Exome Variant ServerKRTAP2-4
ExAC (Exome Aggregation Consortium)KRTAP2-4 (select the gene name)
Genetic variants : HAPMAP85294
Genomic Variants (DGV)KRTAP2-4 [DGVbeta]
DECIPHERKRTAP2-4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP2-4 
Mutations
ICGC Data PortalKRTAP2-4 
TCGA Data PortalKRTAP2-4 
Broad Tumor PortalKRTAP2-4
OASIS PortalKRTAP2-4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP2-4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP2-4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP2-4
DgiDB (Drug Gene Interaction Database)KRTAP2-4
DoCM (Curated mutations)KRTAP2-4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP2-4 (select a term)
intoGenKRTAP2-4
Cancer3DKRTAP2-4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP2-4
Genetic Testing Registry KRTAP2-4
NextProtQ9BYR9 [Medical]
TSGene85294
GENETestsKRTAP2-4
Target ValidationKRTAP2-4
Huge Navigator KRTAP2-4 [HugePedia]
snp3D : Map Gene to Disease85294
BioCentury BCIQKRTAP2-4
ClinGenKRTAP2-4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85294
Chemical/Pharm GKB GenePA38743
Clinical trialKRTAP2-4
Miscellaneous
canSAR (ICR)KRTAP2-4 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP2-4
EVEXKRTAP2-4
GoPubMedKRTAP2-4
iHOPKRTAP2-4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:16 CEST 2017

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