Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KRTAP20-1 (keratin associated protein 20-1)

Identity

Alias_symbol (synonym)KAP20.1
Other alias
HGNC (Hugo) KRTAP20-1
LocusID (NCBI) 337975
Atlas_Id 65086
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30616455 and ends at 30616625 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP20-1   18943
Cards
Entrez_Gene (NCBI)KRTAP20-1  337975  keratin associated protein 20-1
AliasesKAP20.1
GeneCards (Weizmann)KRTAP20-1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:30616455-30616625 [Contig_View]  KRTAP20-1 [Vega]
TCGA cBioPortalKRTAP20-1
AceView (NCBI)KRTAP20-1
Genatlas (Paris)KRTAP20-1
WikiGenes337975
SOURCE (Princeton)KRTAP20-1
Genetics Home Reference (NIH)KRTAP20-1
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP20-1  -     chr21:30616455-30616625 +  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP20-1  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP20-1 - 21q22.11 [CytoView hg19]  KRTAP20-1 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP20-1 [Mapview hg19]  KRTAP20-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096955 BC104846 BC104872
RefSeq transcript (Entrez)NM_181615
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP20-1
Cluster EST : UnigeneHs.553697 [ NCBI ]
CGAP (NCI)Hs.553697
Gene ExpressionKRTAP20-1 [ NCBI-GEO ]   KRTAP20-1 [ EBI - ARRAY_EXPRESS ]   KRTAP20-1 [ SEEK ]   KRTAP20-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP20-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)337975
GTEX Portal (Tissue expression)KRTAP20-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3LI63   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3LI63  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3LI63
Splice isoforms : SwissVarQ3LI63
PhosPhoSitePlusQ3LI63
Domains : Interpro (EBI)KRTAP_type6/8/16/19/20/21   
Domain families : Pfam (Sanger)KRTAP (PF11759)   
Domain families : Pfam (NCBI)pfam11759   
Conserved Domain (NCBI)KRTAP20-1
DMDM Disease mutations337975
Blocks (Seattle)KRTAP20-1
SuperfamilyQ3LI63
Peptide AtlasQ3LI63
HPRD11212
IPIIPI00373955   
Protein Interaction databases
DIP (DOE-UCLA)Q3LI63
IntAct (EBI)Q3LI63
BioGRIDKRTAP20-1
STRING (EMBL)KRTAP20-1
ZODIACKRTAP20-1
Ontologies - Pathways
QuickGOQ3LI63
Ontology : AmiGOcytosol  intermediate filament  keratinization  
Ontology : EGO-EBIcytosol  intermediate filament  keratinization  
NDEx NetworkKRTAP20-1
Atlas of Cancer Signalling NetworkKRTAP20-1
Wikipedia pathwaysKRTAP20-1
Orthology - Evolution
OrthoDB337975
Phylogenetic Trees/Animal Genes : TreeFamKRTAP20-1
HOVERGENQ3LI63
HOGENOMQ3LI63
Homologs : HomoloGeneKRTAP20-1
Homology/Alignments : Family Browser (UCSC)KRTAP20-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP20-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP20-1
dbVarKRTAP20-1
ClinVarKRTAP20-1
1000_GenomesKRTAP20-1 
Exome Variant ServerKRTAP20-1
ExAC (Exome Aggregation Consortium)KRTAP20-1 (select the gene name)
Genetic variants : HAPMAP337975
Genomic Variants (DGV)KRTAP20-1 [DGVbeta]
DECIPHERKRTAP20-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP20-1 
Mutations
ICGC Data PortalKRTAP20-1 
TCGA Data PortalKRTAP20-1 
Broad Tumor PortalKRTAP20-1
OASIS PortalKRTAP20-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP20-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP20-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP20-1
DgiDB (Drug Gene Interaction Database)KRTAP20-1
DoCM (Curated mutations)KRTAP20-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP20-1 (select a term)
intoGenKRTAP20-1
Cancer3DKRTAP20-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP20-1
Genetic Testing Registry KRTAP20-1
NextProtQ3LI63 [Medical]
TSGene337975
GENETestsKRTAP20-1
Huge Navigator KRTAP20-1 [HugePedia]
snp3D : Map Gene to Disease337975
BioCentury BCIQKRTAP20-1
ClinGenKRTAP20-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD337975
Chemical/Pharm GKB GenePA134953935
Clinical trialKRTAP20-1
Miscellaneous
canSAR (ICR)KRTAP20-1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP20-1
EVEXKRTAP20-1
GoPubMedKRTAP20-1
iHOPKRTAP20-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:18:44 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.