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KRTAP20-2 (keratin associated protein 20-2)

Identity

Alias_symbol (synonym)KAP20.2
Other alias
HGNC (Hugo) KRTAP20-2
LocusID (NCBI) 337976
Atlas_Id 65087
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30635264 and ends at 30635461 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP20-2   18944
Cards
Entrez_Gene (NCBI)KRTAP20-2  337976  keratin associated protein 20-2
AliasesKAP20.2
GeneCards (Weizmann)KRTAP20-2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:30635264-30635461 [Contig_View]  KRTAP20-2 [Vega]
TCGA cBioPortalKRTAP20-2
AceView (NCBI)KRTAP20-2
Genatlas (Paris)KRTAP20-2
WikiGenes337976
SOURCE (Princeton)KRTAP20-2
Genetics Home Reference (NIH)KRTAP20-2
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP20-2  -     chr21:30635264-30635461 +  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP20-2  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP20-2 - 21q22.11 [CytoView hg19]  KRTAP20-2 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP20-2 [Mapview hg19]  KRTAP20-2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096957 BC111084
RefSeq transcript (Entrez)NM_181616
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP20-2
Cluster EST : UnigeneHs.553698 [ NCBI ]
CGAP (NCI)Hs.553698
Gene ExpressionKRTAP20-2 [ NCBI-GEO ]   KRTAP20-2 [ EBI - ARRAY_EXPRESS ]   KRTAP20-2 [ SEEK ]   KRTAP20-2 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP20-2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)337976
GTEX Portal (Tissue expression)KRTAP20-2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3LI61   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3LI61  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3LI61
Splice isoforms : SwissVarQ3LI61
PhosPhoSitePlusQ3LI61
Domains : Interpro (EBI)KRTAP_type6/8/16/19/20/21   
Domain families : Pfam (Sanger)KRTAP (PF11759)   
Domain families : Pfam (NCBI)pfam11759   
Conserved Domain (NCBI)KRTAP20-2
DMDM Disease mutations337976
Blocks (Seattle)KRTAP20-2
SuperfamilyQ3LI61
Peptide AtlasQ3LI61
HPRD11213
IPIIPI00332223   
Protein Interaction databases
DIP (DOE-UCLA)Q3LI61
IntAct (EBI)Q3LI61
BioGRIDKRTAP20-2
STRING (EMBL)KRTAP20-2
ZODIACKRTAP20-2
Ontologies - Pathways
QuickGOQ3LI61
Ontology : AmiGOcytosol  intermediate filament  keratinization  
Ontology : EGO-EBIcytosol  intermediate filament  keratinization  
NDEx NetworkKRTAP20-2
Atlas of Cancer Signalling NetworkKRTAP20-2
Wikipedia pathwaysKRTAP20-2
Orthology - Evolution
OrthoDB337976
Phylogenetic Trees/Animal Genes : TreeFamKRTAP20-2
HOVERGENQ3LI61
HOGENOMQ3LI61
Homologs : HomoloGeneKRTAP20-2
Homology/Alignments : Family Browser (UCSC)KRTAP20-2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP20-2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP20-2
dbVarKRTAP20-2
ClinVarKRTAP20-2
1000_GenomesKRTAP20-2 
Exome Variant ServerKRTAP20-2
ExAC (Exome Aggregation Consortium)KRTAP20-2 (select the gene name)
Genetic variants : HAPMAP337976
Genomic Variants (DGV)KRTAP20-2 [DGVbeta]
DECIPHERKRTAP20-2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP20-2 
Mutations
ICGC Data PortalKRTAP20-2 
TCGA Data PortalKRTAP20-2 
Broad Tumor PortalKRTAP20-2
OASIS PortalKRTAP20-2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP20-2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP20-2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP20-2
DgiDB (Drug Gene Interaction Database)KRTAP20-2
DoCM (Curated mutations)KRTAP20-2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP20-2 (select a term)
intoGenKRTAP20-2
Cancer3DKRTAP20-2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP20-2
Genetic Testing Registry KRTAP20-2
NextProtQ3LI61 [Medical]
TSGene337976
GENETestsKRTAP20-2
Target ValidationKRTAP20-2
Huge Navigator KRTAP20-2 [HugePedia]
snp3D : Map Gene to Disease337976
BioCentury BCIQKRTAP20-2
ClinGenKRTAP20-2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD337976
Chemical/Pharm GKB GenePA134896461
Clinical trialKRTAP20-2
Miscellaneous
canSAR (ICR)KRTAP20-2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP20-2
EVEXKRTAP20-2
GoPubMedKRTAP20-2
iHOPKRTAP20-2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:13 CEST 2017

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