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KRTAP20-3 (keratin associated protein 20-3)

Identity

Alias (NCBI)KAP19D
KAP20.3
KRTAP19P4
HGNC (Hugo) KRTAP20-3
HGNC Alias symbKAP20.3
KAP19D
HGNC Previous nameKRTAP19P4
HGNC Previous namekeratin associated protein 19 pseudogene 4
LocusID (NCBI) 337985
Atlas_Id 65088
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30642864 and ends at 30643136 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)KRTAP20-3   34001
Cards
Entrez_Gene (NCBI)KRTAP20-3    keratin associated protein 20-3
AliasesKAP19D; KAP20.3; KRTAP19P4
GeneCards (Weizmann)KRTAP20-3
Ensembl hg19 (Hinxton)ENSG00000206104 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206104 [Gene_View]  ENSG00000206104 [Sequence]  chr21:30642864-30643136 [Contig_View]  KRTAP20-3 [Vega]
ICGC DataPortalENSG00000206104
TCGA cBioPortalKRTAP20-3
AceView (NCBI)KRTAP20-3
Genatlas (Paris)KRTAP20-3
SOURCE (Princeton)KRTAP20-3
Genetics Home Reference (NIH)KRTAP20-3
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP20-3  -     chr21:30642864-30643136 +  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP20-3  -     21q22.11   [Description]    (hg19-Feb_2009)
GoldenPathKRTAP20-3 - 21q22.11 [CytoView hg19]  KRTAP20-3 - 21q22.11 [CytoView hg38]
ImmunoBaseENSG00000206104
genome Data Viewer NCBIKRTAP20-3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB096958
RefSeq transcript (Entrez)NM_001128077
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP20-3
Alternative Splicing GalleryENSG00000206104
Gene ExpressionKRTAP20-3 [ NCBI-GEO ]   KRTAP20-3 [ EBI - ARRAY_EXPRESS ]   KRTAP20-3 [ SEEK ]   KRTAP20-3 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP20-3 [ Firebrowse - Broad ]
GenevisibleExpression of KRTAP20-3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)337985
GTEX Portal (Tissue expression)KRTAP20-3
Human Protein AtlasENSG00000206104-KRTAP20-3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3LI60   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3LI60  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3LI60
Splice isoforms : SwissVarQ3LI60
PhosPhoSitePlusQ3LI60
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KRTAP20-3
Blocks (Seattle)KRTAP20-3
SuperfamilyQ3LI60
Human Protein Atlas [tissue]ENSG00000206104-KRTAP20-3 [tissue]
Peptide AtlasQ3LI60
IPIIPI00654833   
Protein Interaction databases
DIP (DOE-UCLA)Q3LI60
IntAct (EBI)Q3LI60
BioGRIDKRTAP20-3
STRING (EMBL)KRTAP20-3
ZODIACKRTAP20-3
Ontologies - Pathways
QuickGOQ3LI60
Ontology : AmiGOintermediate filament  
Ontology : EGO-EBIintermediate filament  
NDEx NetworkKRTAP20-3
Atlas of Cancer Signalling NetworkKRTAP20-3
Wikipedia pathwaysKRTAP20-3
Orthology - Evolution
OrthoDB337985
GeneTree (enSembl)ENSG00000206104
Phylogenetic Trees/Animal Genes : TreeFamKRTAP20-3
HOGENOMQ3LI60
Homologs : HomoloGeneKRTAP20-3
Homology/Alignments : Family Browser (UCSC)KRTAP20-3
Gene fusions - Rearrangements
Fusion : QuiverKRTAP20-3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP20-3 [hg38]
dbVarKRTAP20-3
ClinVarKRTAP20-3
MonarchKRTAP20-3
1000_GenomesKRTAP20-3 
Exome Variant ServerKRTAP20-3
GNOMAD BrowserENSG00000206104
Varsome BrowserKRTAP20-3
Genomic Variants (DGV)KRTAP20-3 [DGVbeta]
DECIPHERKRTAP20-3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP20-3 
Mutations
ICGC Data PortalKRTAP20-3 
TCGA Data PortalKRTAP20-3 
Broad Tumor PortalKRTAP20-3
OASIS PortalKRTAP20-3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP20-3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DKRTAP20-3
Mutations and Diseases : HGMDKRTAP20-3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP20-3
DgiDB (Drug Gene Interaction Database)KRTAP20-3
DoCM (Curated mutations)KRTAP20-3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP20-3 (select a term)
intoGenKRTAP20-3
Cancer3DKRTAP20-3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETKRTAP20-3
MedgenKRTAP20-3
Genetic Testing Registry KRTAP20-3
NextProtQ3LI60 [Medical]
GENETestsKRTAP20-3
Target ValidationKRTAP20-3
Huge Navigator KRTAP20-3 [HugePedia]
ClinGenKRTAP20-3
Clinical trials, drugs, therapy
MyCancerGenomeKRTAP20-3
Protein Interactions : CTD
Pharm GKB GenePA162393749
Clinical trialKRTAP20-3
Miscellaneous
canSAR (ICR)KRTAP20-3 (select the gene name)
HarmonizomeKRTAP20-3
DataMed IndexKRTAP20-3
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP20-3
EVEXKRTAP20-3
GoPubMedKRTAP20-3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:59:18 CET 2020
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