Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRTAP20-4 (keratin associated protein 20-4)

Identity

Alias_symbol (synonym)KAP20.4
Other alias
HGNC (Hugo) KRTAP20-4
LocusID (NCBI) 100151643
Atlas_Id 65089
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30620627 and ends at 30620850 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP20-4   34002
Cards
Entrez_Gene (NCBI)KRTAP20-4  100151643  keratin associated protein 20-4
AliasesKAP20.4
GeneCards (Weizmann)KRTAP20-4
Ensembl hg19 (Hinxton)ENSG00000206105 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206105 [Gene_View]  chr21:30620627-30620850 [Contig_View]  KRTAP20-4 [Vega]
ICGC DataPortalENSG00000206105
TCGA cBioPortalKRTAP20-4
AceView (NCBI)KRTAP20-4
Genatlas (Paris)KRTAP20-4
WikiGenes100151643
SOURCE (Princeton)KRTAP20-4
Genetics Home Reference (NIH)KRTAP20-4
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP20-4  -     chr21:30620627-30620850 +  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP20-4  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP20-4 - 21q22.11 [CytoView hg19]  KRTAP20-4 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP20-4 [Mapview hg19]  KRTAP20-4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096956
RefSeq transcript (Entrez)NM_001350977
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP20-4
Cluster EST : UnigeneHs.580879 [ NCBI ]
CGAP (NCI)Hs.580879
Alternative Splicing GalleryENSG00000206105
Gene ExpressionKRTAP20-4 [ NCBI-GEO ]   KRTAP20-4 [ EBI - ARRAY_EXPRESS ]   KRTAP20-4 [ SEEK ]   KRTAP20-4 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP20-4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100151643
GTEX Portal (Tissue expression)KRTAP20-4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3LI62   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3LI62  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3LI62
Splice isoforms : SwissVarQ3LI62
PhosPhoSitePlusQ3LI62
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KRTAP20-4
DMDM Disease mutations100151643
Blocks (Seattle)KRTAP20-4
SuperfamilyQ3LI62
Human Protein AtlasENSG00000206105
Peptide AtlasQ3LI62
Protein Interaction databases
DIP (DOE-UCLA)Q3LI62
IntAct (EBI)Q3LI62
FunCoupENSG00000206105
BioGRIDKRTAP20-4
STRING (EMBL)KRTAP20-4
ZODIACKRTAP20-4
Ontologies - Pathways
QuickGOQ3LI62
Ontology : AmiGOintermediate filament  
Ontology : EGO-EBIintermediate filament  
NDEx NetworkKRTAP20-4
Atlas of Cancer Signalling NetworkKRTAP20-4
Wikipedia pathwaysKRTAP20-4
Orthology - Evolution
OrthoDB100151643
GeneTree (enSembl)ENSG00000206105
Phylogenetic Trees/Animal Genes : TreeFamKRTAP20-4
HOVERGENQ3LI62
HOGENOMQ3LI62
Homologs : HomoloGeneKRTAP20-4
Homology/Alignments : Family Browser (UCSC)KRTAP20-4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP20-4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP20-4
dbVarKRTAP20-4
ClinVarKRTAP20-4
1000_GenomesKRTAP20-4 
Exome Variant ServerKRTAP20-4
ExAC (Exome Aggregation Consortium)KRTAP20-4 (select the gene name)
Genetic variants : HAPMAP100151643
Genomic Variants (DGV)KRTAP20-4 [DGVbeta]
DECIPHERKRTAP20-4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP20-4 
Mutations
ICGC Data PortalKRTAP20-4 
TCGA Data PortalKRTAP20-4 
Broad Tumor PortalKRTAP20-4
OASIS PortalKRTAP20-4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP20-4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP20-4
BioMutasearch KRTAP20-4
DgiDB (Drug Gene Interaction Database)KRTAP20-4
DoCM (Curated mutations)KRTAP20-4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP20-4 (select a term)
intoGenKRTAP20-4
Cancer3DKRTAP20-4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP20-4
Genetic Testing Registry KRTAP20-4
NextProtQ3LI62 [Medical]
TSGene100151643
GENETestsKRTAP20-4
Huge Navigator KRTAP20-4 [HugePedia]
snp3D : Map Gene to Disease100151643
BioCentury BCIQKRTAP20-4
ClinGenKRTAP20-4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100151643
Chemical/Pharm GKB GenePA162393750
Clinical trialKRTAP20-4
Miscellaneous
canSAR (ICR)KRTAP20-4 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP20-4
EVEXKRTAP20-4
GoPubMedKRTAP20-4
iHOPKRTAP20-4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Fri May 19 11:18:45 CEST 2017

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