Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRTAP21-1 (keratin associated protein 21-1)

Identity

Alias_symbol (synonym)KAP21.1
Other alias
HGNC (Hugo) KRTAP21-1
LocusID (NCBI) 337977
Atlas_Id 65091
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30755139 and ends at 30755378 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP21-1   18945
Cards
Entrez_Gene (NCBI)KRTAP21-1  337977  keratin associated protein 21-1
AliasesKAP21.1
GeneCards (Weizmann)KRTAP21-1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:30755139-30755378 [Contig_View]  KRTAP21-1 [Vega]
TCGA cBioPortalKRTAP21-1
AceView (NCBI)KRTAP21-1
Genatlas (Paris)KRTAP21-1
WikiGenes337977
SOURCE (Princeton)KRTAP21-1
Genetics Home Reference (NIH)KRTAP21-1
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP21-1  -     chr21:30755139-30755378 -  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP21-1  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP21-1 - 21q22.11 [CytoView hg19]  KRTAP21-1 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP21-1 [Mapview hg19]  KRTAP21-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096960 BC105029 BC105031
RefSeq transcript (Entrez)NM_181619
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP21-1
Cluster EST : UnigeneHs.567837 [ NCBI ]
CGAP (NCI)Hs.567837
Gene ExpressionKRTAP21-1 [ NCBI-GEO ]   KRTAP21-1 [ EBI - ARRAY_EXPRESS ]   KRTAP21-1 [ SEEK ]   KRTAP21-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP21-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)337977
GTEX Portal (Tissue expression)KRTAP21-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3LI58   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3LI58  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3LI58
Splice isoforms : SwissVarQ3LI58
PhosPhoSitePlusQ3LI58
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KRTAP21-1
DMDM Disease mutations337977
Blocks (Seattle)KRTAP21-1
SuperfamilyQ3LI58
Peptide AtlasQ3LI58
HPRD11214
IPIIPI00373957   IPI00847370   
Protein Interaction databases
DIP (DOE-UCLA)Q3LI58
IntAct (EBI)Q3LI58
BioGRIDKRTAP21-1
STRING (EMBL)KRTAP21-1
ZODIACKRTAP21-1
Ontologies - Pathways
QuickGOQ3LI58
Ontology : AmiGOcytosol  intermediate filament  keratinization  
Ontology : EGO-EBIcytosol  intermediate filament  keratinization  
NDEx NetworkKRTAP21-1
Atlas of Cancer Signalling NetworkKRTAP21-1
Wikipedia pathwaysKRTAP21-1
Orthology - Evolution
OrthoDB337977
Phylogenetic Trees/Animal Genes : TreeFamKRTAP21-1
HOVERGENQ3LI58
HOGENOMQ3LI58
Homologs : HomoloGeneKRTAP21-1
Homology/Alignments : Family Browser (UCSC)KRTAP21-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP21-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP21-1
dbVarKRTAP21-1
ClinVarKRTAP21-1
1000_GenomesKRTAP21-1 
Exome Variant ServerKRTAP21-1
ExAC (Exome Aggregation Consortium)KRTAP21-1 (select the gene name)
Genetic variants : HAPMAP337977
Genomic Variants (DGV)KRTAP21-1 [DGVbeta]
DECIPHERKRTAP21-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP21-1 
Mutations
ICGC Data PortalKRTAP21-1 
TCGA Data PortalKRTAP21-1 
Broad Tumor PortalKRTAP21-1
OASIS PortalKRTAP21-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP21-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP21-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP21-1
DgiDB (Drug Gene Interaction Database)KRTAP21-1
DoCM (Curated mutations)KRTAP21-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP21-1 (select a term)
intoGenKRTAP21-1
Cancer3DKRTAP21-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP21-1
Genetic Testing Registry KRTAP21-1
NextProtQ3LI58 [Medical]
TSGene337977
GENETestsKRTAP21-1
Target ValidationKRTAP21-1
Huge Navigator KRTAP21-1 [HugePedia]
snp3D : Map Gene to Disease337977
BioCentury BCIQKRTAP21-1
ClinGenKRTAP21-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD337977
Chemical/Pharm GKB GenePA134897035
Clinical trialKRTAP21-1
Miscellaneous
canSAR (ICR)KRTAP21-1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP21-1
EVEXKRTAP21-1
GoPubMedKRTAP21-1
iHOPKRTAP21-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:55:14 CEST 2017

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