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KRTAP21-2 (keratin associated protein 21-2)

Identity

Alias_symbol (synonym)KAP21.2
Other alias
HGNC (Hugo) KRTAP21-2
LocusID (NCBI) 337978
Atlas_Id 65092
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 32119269 and ends at 32119520 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP21-2   18946
Cards
Entrez_Gene (NCBI)KRTAP21-2  337978  keratin associated protein 21-2
AliasesKAP21.2
GeneCards (Weizmann)KRTAP21-2
Ensembl hg19 (Hinxton) [Gene_View]  chr21:32119269-32119520 [Contig_View]  KRTAP21-2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:32119269-32119520 [Contig_View]  KRTAP21-2 [Vega]
TCGA cBioPortalKRTAP21-2
AceView (NCBI)KRTAP21-2
Genatlas (Paris)KRTAP21-2
WikiGenes337978
SOURCE (Princeton)KRTAP21-2
Genetics Home Reference (NIH)KRTAP21-2
Genomic and cartography
GoldenPath hg19 (UCSC)KRTAP21-2  -     chr21:32119269-32119520 -  21q22.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)KRTAP21-2  -     21q22.11   [Description]    (hg38-Dec_2013)
EnsemblKRTAP21-2 - 21q22.11 [CytoView hg19]  KRTAP21-2 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP21-2 [Mapview hg19]  KRTAP21-2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096959 BC156534 BC157080
RefSeq transcript (Entrez)NM_181617
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929426
Consensus coding sequences : CCDS (NCBI)KRTAP21-2
Cluster EST : UnigeneHs.553699 [ NCBI ]
CGAP (NCI)Hs.553699
Gene ExpressionKRTAP21-2 [ NCBI-GEO ]   KRTAP21-2 [ EBI - ARRAY_EXPRESS ]   KRTAP21-2 [ SEEK ]   KRTAP21-2 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP21-2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)337978
GTEX Portal (Tissue expression)KRTAP21-2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3LI59   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3LI59  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3LI59
Splice isoforms : SwissVarQ3LI59
PhosPhoSitePlusQ3LI59
Domains : Interpro (EBI)Krtap21-2    KRTAP_type6/8/16/19/20   
Domain families : Pfam (Sanger)KRTAP (PF11759)   
Domain families : Pfam (NCBI)pfam11759   
Conserved Domain (NCBI)KRTAP21-2
DMDM Disease mutations337978
Blocks (Seattle)KRTAP21-2
SuperfamilyQ3LI59
Peptide AtlasQ3LI59
HPRD11215
IPIIPI00373956   
Protein Interaction databases
DIP (DOE-UCLA)Q3LI59
IntAct (EBI)Q3LI59
BioGRIDKRTAP21-2
STRING (EMBL)KRTAP21-2
ZODIACKRTAP21-2
Ontologies - Pathways
QuickGOQ3LI59
Ontology : AmiGOintermediate filament  structural constituent of cutaneous appendage  
Ontology : EGO-EBIintermediate filament  structural constituent of cutaneous appendage  
NDEx NetworkKRTAP21-2
Atlas of Cancer Signalling NetworkKRTAP21-2
Wikipedia pathwaysKRTAP21-2
Orthology - Evolution
OrthoDB337978
Phylogenetic Trees/Animal Genes : TreeFamKRTAP21-2
HOVERGENQ3LI59
HOGENOMQ3LI59
Homologs : HomoloGeneKRTAP21-2
Homology/Alignments : Family Browser (UCSC)KRTAP21-2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP21-2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP21-2
dbVarKRTAP21-2
ClinVarKRTAP21-2
1000_GenomesKRTAP21-2 
Exome Variant ServerKRTAP21-2
ExAC (Exome Aggregation Consortium)KRTAP21-2 (select the gene name)
Genetic variants : HAPMAP337978
Genomic Variants (DGV)KRTAP21-2 [DGVbeta]
DECIPHER (Syndromes)21:32119269-32119520  
CONAN: Copy Number AnalysisKRTAP21-2 
Mutations
ICGC Data PortalKRTAP21-2 
TCGA Data PortalKRTAP21-2 
Broad Tumor PortalKRTAP21-2
OASIS PortalKRTAP21-2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP21-2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP21-2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP21-2
DgiDB (Drug Gene Interaction Database)KRTAP21-2
DoCM (Curated mutations)KRTAP21-2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP21-2 (select a term)
intoGenKRTAP21-2
Cancer3DKRTAP21-2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP21-2
Genetic Testing Registry KRTAP21-2
NextProtQ3LI59 [Medical]
TSGene337978
GENETestsKRTAP21-2
Huge Navigator KRTAP21-2 [HugePedia]
snp3D : Map Gene to Disease337978
BioCentury BCIQKRTAP21-2
ClinGenKRTAP21-2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD337978
Chemical/Pharm GKB GenePA134884584
Clinical trialKRTAP21-2
Miscellaneous
canSAR (ICR)KRTAP21-2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP21-2
EVEXKRTAP21-2
GoPubMedKRTAP21-2
iHOPKRTAP21-2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:10:28 CET 2017

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