Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRTAP21-3 (keratin associated protein 21-3)

Identity

Other alias-
HGNC (Hugo) KRTAP21-3
LocusID (NCBI) 100288323
Atlas_Id 65093
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30718525 and ends at 30718777 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP21-3   34216
Cards
Entrez_Gene (NCBI)KRTAP21-3  100288323  keratin associated protein 21-3
Aliases
GeneCards (Weizmann)KRTAP21-3
Ensembl hg19 (Hinxton)ENSG00000231068 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231068 [Gene_View]  chr21:30718525-30718777 [Contig_View]  KRTAP21-3 [Vega]
ICGC DataPortalENSG00000231068
TCGA cBioPortalKRTAP21-3
AceView (NCBI)KRTAP21-3
Genatlas (Paris)KRTAP21-3
WikiGenes100288323
SOURCE (Princeton)KRTAP21-3
Genetics Home Reference (NIH)KRTAP21-3
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP21-3  -     chr21:30718525-30718777 -  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP21-3  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP21-3 - 21q22.11 [CytoView hg19]  KRTAP21-3 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP21-3 [Mapview hg19]  KRTAP21-3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB180042
RefSeq transcript (Entrez)NM_001164435
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP21-3
Cluster EST : UnigeneHs.580877 [ NCBI ]
CGAP (NCI)Hs.580877
Alternative Splicing GalleryENSG00000231068
Gene ExpressionKRTAP21-3 [ NCBI-GEO ]   KRTAP21-3 [ EBI - ARRAY_EXPRESS ]   KRTAP21-3 [ SEEK ]   KRTAP21-3 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP21-3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100288323
GTEX Portal (Tissue expression)KRTAP21-3
Human Protein AtlasENSG00000231068-KRTAP21-3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3LHN1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3LHN1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3LHN1
Splice isoforms : SwissVarQ3LHN1
PhosPhoSitePlusQ3LHN1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KRTAP21-3
DMDM Disease mutations100288323
Blocks (Seattle)KRTAP21-3
SuperfamilyQ3LHN1
Human Protein Atlas [tissue]ENSG00000231068-KRTAP21-3 [tissue]
Peptide AtlasQ3LHN1
IPIIPI00654790   
Protein Interaction databases
DIP (DOE-UCLA)Q3LHN1
IntAct (EBI)Q3LHN1
FunCoupENSG00000231068
BioGRIDKRTAP21-3
STRING (EMBL)KRTAP21-3
ZODIACKRTAP21-3
Ontologies - Pathways
QuickGOQ3LHN1
Ontology : AmiGOcytosol  intermediate filament  keratinization  
Ontology : EGO-EBIcytosol  intermediate filament  keratinization  
NDEx NetworkKRTAP21-3
Atlas of Cancer Signalling NetworkKRTAP21-3
Wikipedia pathwaysKRTAP21-3
Orthology - Evolution
OrthoDB100288323
GeneTree (enSembl)ENSG00000231068
Phylogenetic Trees/Animal Genes : TreeFamKRTAP21-3
HOVERGENQ3LHN1
HOGENOMQ3LHN1
Homologs : HomoloGeneKRTAP21-3
Homology/Alignments : Family Browser (UCSC)KRTAP21-3
Gene fusions - Rearrangements
Fusion: Tumor Portal KRTAP21-3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP21-3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP21-3
dbVarKRTAP21-3
ClinVarKRTAP21-3
1000_GenomesKRTAP21-3 
Exome Variant ServerKRTAP21-3
ExAC (Exome Aggregation Consortium)ENSG00000231068
GNOMAD BrowserENSG00000231068
Genetic variants : HAPMAP100288323
Genomic Variants (DGV)KRTAP21-3 [DGVbeta]
DECIPHERKRTAP21-3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP21-3 
Mutations
ICGC Data PortalKRTAP21-3 
TCGA Data PortalKRTAP21-3 
Broad Tumor PortalKRTAP21-3
OASIS PortalKRTAP21-3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP21-3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP21-3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP21-3
DgiDB (Drug Gene Interaction Database)KRTAP21-3
DoCM (Curated mutations)KRTAP21-3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP21-3 (select a term)
intoGenKRTAP21-3
Cancer3DKRTAP21-3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP21-3
Genetic Testing Registry KRTAP21-3
NextProtQ3LHN1 [Medical]
TSGene100288323
GENETestsKRTAP21-3
Target ValidationKRTAP21-3
Huge Navigator KRTAP21-3 [HugePedia]
snp3D : Map Gene to Disease100288323
BioCentury BCIQKRTAP21-3
ClinGenKRTAP21-3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100288323
Chemical/Pharm GKB GenePA165378419
Clinical trialKRTAP21-3
Miscellaneous
canSAR (ICR)KRTAP21-3 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP21-3
EVEXKRTAP21-3
GoPubMedKRTAP21-3
iHOPKRTAP21-3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:53:06 CET 2017

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