Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KRTAP22-1 (keratin associated protein 22-1)

Identity

Alias_symbol (synonym)KAP22.1
Other alias
HGNC (Hugo) KRTAP22-1
LocusID (NCBI) 337979
Atlas_Id 65095
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30601121 and ends at 30601267 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP22-1   18947
Cards
Entrez_Gene (NCBI)KRTAP22-1  337979  keratin associated protein 22-1
AliasesKAP22.1
GeneCards (Weizmann)KRTAP22-1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr21:30601121-30601267 [Contig_View]  KRTAP22-1 [Vega]
TCGA cBioPortalKRTAP22-1
AceView (NCBI)KRTAP22-1
Genatlas (Paris)KRTAP22-1
WikiGenes337979
SOURCE (Princeton)KRTAP22-1
Genetics Home Reference (NIH)KRTAP22-1
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP22-1  -     chr21:30601121-30601267 +  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP22-1  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP22-1 - 21q22.11 [CytoView hg19]  KRTAP22-1 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP22-1 [Mapview hg19]  KRTAP22-1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096953 BC101682 BC101686
RefSeq transcript (Entrez)NM_181620
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP22-1
Cluster EST : UnigeneHs.553700 [ NCBI ]
CGAP (NCI)Hs.553700
Gene ExpressionKRTAP22-1 [ NCBI-GEO ]   KRTAP22-1 [ EBI - ARRAY_EXPRESS ]   KRTAP22-1 [ SEEK ]   KRTAP22-1 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP22-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)337979
GTEX Portal (Tissue expression)KRTAP22-1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3MIV0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3MIV0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3MIV0
Splice isoforms : SwissVarQ3MIV0
PhosPhoSitePlusQ3MIV0
Domains : Interpro (EBI)KRTAP_type6/8/16/19/20/21   
Domain families : Pfam (Sanger)KRTAP (PF11759)   
Domain families : Pfam (NCBI)pfam11759   
Conserved Domain (NCBI)KRTAP22-1
DMDM Disease mutations337979
Blocks (Seattle)KRTAP22-1
SuperfamilyQ3MIV0
Peptide AtlasQ3MIV0
HPRD11216
IPIIPI00373958   
Protein Interaction databases
DIP (DOE-UCLA)Q3MIV0
IntAct (EBI)Q3MIV0
BioGRIDKRTAP22-1
STRING (EMBL)KRTAP22-1
ZODIACKRTAP22-1
Ontologies - Pathways
QuickGOQ3MIV0
Ontology : AmiGOcytosol  intermediate filament  keratinization  
Ontology : EGO-EBIcytosol  intermediate filament  keratinization  
NDEx NetworkKRTAP22-1
Atlas of Cancer Signalling NetworkKRTAP22-1
Wikipedia pathwaysKRTAP22-1
Orthology - Evolution
OrthoDB337979
Phylogenetic Trees/Animal Genes : TreeFamKRTAP22-1
HOVERGENQ3MIV0
HOGENOMQ3MIV0
Homologs : HomoloGeneKRTAP22-1
Homology/Alignments : Family Browser (UCSC)KRTAP22-1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP22-1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP22-1
dbVarKRTAP22-1
ClinVarKRTAP22-1
1000_GenomesKRTAP22-1 
Exome Variant ServerKRTAP22-1
ExAC (Exome Aggregation Consortium)KRTAP22-1 (select the gene name)
Genetic variants : HAPMAP337979
Genomic Variants (DGV)KRTAP22-1 [DGVbeta]
DECIPHERKRTAP22-1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP22-1 
Mutations
ICGC Data PortalKRTAP22-1 
TCGA Data PortalKRTAP22-1 
Broad Tumor PortalKRTAP22-1
OASIS PortalKRTAP22-1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP22-1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP22-1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP22-1
DgiDB (Drug Gene Interaction Database)KRTAP22-1
DoCM (Curated mutations)KRTAP22-1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP22-1 (select a term)
intoGenKRTAP22-1
Cancer3DKRTAP22-1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP22-1
Genetic Testing Registry KRTAP22-1
NextProtQ3MIV0 [Medical]
TSGene337979
GENETestsKRTAP22-1
Target ValidationKRTAP22-1
Huge Navigator KRTAP22-1 [HugePedia]
snp3D : Map Gene to Disease337979
BioCentury BCIQKRTAP22-1
ClinGenKRTAP22-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD337979
Chemical/Pharm GKB GenePA134897377
Clinical trialKRTAP22-1
Miscellaneous
canSAR (ICR)KRTAP22-1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP22-1
EVEXKRTAP22-1
GoPubMedKRTAP22-1
iHOPKRTAP22-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:12:19 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.