Atlas of Genetics and Cytogenetics in Oncology and Haematology


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KRTAP22-2 (keratin associated protein 22-2)

Identity

Alias_symbol (synonym)KAP22.2
Other alias
HGNC (Hugo) KRTAP22-2
LocusID (NCBI) 100288287
Atlas_Id 65096
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 30590105 and ends at 30590397 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)KRTAP22-2   37091
Cards
Entrez_Gene (NCBI)KRTAP22-2  100288287  keratin associated protein 22-2
AliasesKAP22.2
GeneCards (Weizmann)KRTAP22-2
Ensembl hg19 (Hinxton)ENSG00000206106 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206106 [Gene_View]  chr21:30590105-30590397 [Contig_View]  KRTAP22-2 [Vega]
ICGC DataPortalENSG00000206106
TCGA cBioPortalKRTAP22-2
AceView (NCBI)KRTAP22-2
Genatlas (Paris)KRTAP22-2
WikiGenes100288287
SOURCE (Princeton)KRTAP22-2
Genetics Home Reference (NIH)KRTAP22-2
Genomic and cartography
GoldenPath hg38 (UCSC)KRTAP22-2  -     chr21:30590105-30590397 -  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)KRTAP22-2  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblKRTAP22-2 - 21q22.11 [CytoView hg19]  KRTAP22-2 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIKRTAP22-2 [Mapview hg19]  KRTAP22-2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB096950
RefSeq transcript (Entrez)NM_001164434
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)KRTAP22-2
Cluster EST : UnigeneHs.580880 [ NCBI ]
CGAP (NCI)Hs.580880
Alternative Splicing GalleryENSG00000206106
Gene ExpressionKRTAP22-2 [ NCBI-GEO ]   KRTAP22-2 [ EBI - ARRAY_EXPRESS ]   KRTAP22-2 [ SEEK ]   KRTAP22-2 [ MEM ]
Gene Expression Viewer (FireBrowse)KRTAP22-2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100288287
GTEX Portal (Tissue expression)KRTAP22-2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3LI68   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3LI68  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3LI68
Splice isoforms : SwissVarQ3LI68
PhosPhoSitePlusQ3LI68
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)KRTAP22-2
DMDM Disease mutations100288287
Blocks (Seattle)KRTAP22-2
SuperfamilyQ3LI68
Human Protein AtlasENSG00000206106
Peptide AtlasQ3LI68
IPIIPI00654804   
Protein Interaction databases
DIP (DOE-UCLA)Q3LI68
IntAct (EBI)Q3LI68
FunCoupENSG00000206106
BioGRIDKRTAP22-2
STRING (EMBL)KRTAP22-2
ZODIACKRTAP22-2
Ontologies - Pathways
QuickGOQ3LI68
Ontology : AmiGOintermediate filament  
Ontology : EGO-EBIintermediate filament  
NDEx NetworkKRTAP22-2
Atlas of Cancer Signalling NetworkKRTAP22-2
Wikipedia pathwaysKRTAP22-2
Orthology - Evolution
OrthoDB100288287
GeneTree (enSembl)ENSG00000206106
Phylogenetic Trees/Animal Genes : TreeFamKRTAP22-2
HOVERGENQ3LI68
HOGENOMQ3LI68
Homologs : HomoloGeneKRTAP22-2
Homology/Alignments : Family Browser (UCSC)KRTAP22-2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerKRTAP22-2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)KRTAP22-2
dbVarKRTAP22-2
ClinVarKRTAP22-2
1000_GenomesKRTAP22-2 
Exome Variant ServerKRTAP22-2
ExAC (Exome Aggregation Consortium)KRTAP22-2 (select the gene name)
Genetic variants : HAPMAP100288287
Genomic Variants (DGV)KRTAP22-2 [DGVbeta]
DECIPHERKRTAP22-2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisKRTAP22-2 
Mutations
ICGC Data PortalKRTAP22-2 
TCGA Data PortalKRTAP22-2 
Broad Tumor PortalKRTAP22-2
OASIS PortalKRTAP22-2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICKRTAP22-2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDKRTAP22-2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch KRTAP22-2
DgiDB (Drug Gene Interaction Database)KRTAP22-2
DoCM (Curated mutations)KRTAP22-2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)KRTAP22-2 (select a term)
intoGenKRTAP22-2
Cancer3DKRTAP22-2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenKRTAP22-2
Genetic Testing Registry KRTAP22-2
NextProtQ3LI68 [Medical]
TSGene100288287
GENETestsKRTAP22-2
Target ValidationKRTAP22-2
Huge Navigator KRTAP22-2 [HugePedia]
snp3D : Map Gene to Disease100288287
BioCentury BCIQKRTAP22-2
ClinGenKRTAP22-2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100288287
Chemical/Pharm GKB GenePA165378424
Clinical trialKRTAP22-2
Miscellaneous
canSAR (ICR)KRTAP22-2 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineKRTAP22-2
EVEXKRTAP22-2
GoPubMedKRTAP22-2
iHOPKRTAP22-2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:12:19 CEST 2017

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